Gene annotation
Transcriptome id Sobic.008G010700.1,Sobic.008G010700.2,Sobic.008G010700.3
Synonym Sb08g001005
Functional annotation RGH1A, putative, expressed
UniProt A0A1B6PAJ2
Pfam PF05496
Panther DB PTHR23155 PTHR23155:SF484
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT3G46730 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os11g37880.1 : stripe rust resistance protein Yr10, putative, expressed
MaizeGDB (Corn) Zm00025a012817
Brachypodium -
Barley HORVU7Hr1G095630.12 , HORVU7Hr1G095630.14 , HORVU7Hr1G095630.1 , HORVU7Hr1G095630.2 , HORVU7Hr1G095630.3 , HORVU7Hr1G095630.4 , HORVU7Hr1G095630.5 , HORVU7Hr1G095630.6 , HORVU7Hr1G095630.7 , HORVU7Hr1G095630.8 , HORVU7Hr1G095630.9 , HORVU7Hr1G095630.10 , HORVU7Hr1G095630.11
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G392000 WD40-like Beta Propeller Repeat family protein, expressed -
2 Sobic.001G303600 respiratory burst oxidase protein B, putative, expressed -
3 Sobic.004G072400 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.004G126200 expressed protein -
5 Sobic.004G101100 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed -
6 Sobic.001G160400 integral membrane protein DUF6 containing protein, expressed -
7 Sobic.003G238200 receptor-like protein kinase, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
8 Sobic.004G012200 phytosulfokine receptor precursor, putative, expressed -
9 Sobic.005G219900 NB-ARC domain containing protein, expressed -
10 Sobic.006G194700 zinc finger, C3HC4 type domain containing protein, expressed K10663: E3 ubiquitin-protein ligase ATL4
11 Sobic.003G270000 - -
12 Sobic.009G133100 cytochrome P450 72A1, putative, expressed -
13 Sobic.001G058000 - -
14 Sobic.008G055650 - -
15 Sobic.007G131300 endoglucanase, putative, expressed -
16 Sobic.004G156100 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.006G057300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@leucoanthocyanidin dioxygenase, putative, expressed -
18 Sobic.005G005800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@laccase-23 precursor, putative, expressed K05909: laccase
19 Sobic.005G205550 - -
20 Sobic.009G160900 expressed protein -


Gene co-expression network
sample Sobic008G010700 Sobic008G010700 Sobic001G392000 Sobic001G392000 Sobic008G010700--Sobic001G392000 Sobic001G303600 Sobic001G303600 Sobic008G010700--Sobic001G303600 Sobic004G072400 Sobic004G072400 Sobic008G010700--Sobic004G072400 Sobic004G126200 Sobic004G126200 Sobic008G010700--Sobic004G126200 Sobic004G101100 Sobic004G101100 Sobic008G010700--Sobic004G101100 Sobic001G160400 Sobic001G160400 Sobic008G010700--Sobic001G160400 Sobic003G238200 Sobic003G238200 Sobic008G010700--Sobic003G238200 Sobic004G012200 Sobic004G012200 Sobic008G010700--Sobic004G012200 Sobic005G219900 Sobic005G219900 Sobic008G010700--Sobic005G219900 Sobic001G392000--Sobic001G303600 Sobic004G156100 Sobic004G156100 Sobic001G392000--Sobic004G156100 Sobic003G270000 Sobic003G270000 Sobic001G392000--Sobic003G270000 Sobic001G392000--Sobic004G072400 Sobic001G392000--Sobic008G010700 Sobic005G205550 Sobic005G205550 Sobic001G392000--Sobic005G205550 Sobic007G131300 Sobic007G131300 Sobic001G392000--Sobic007G131300 Sobic009G133100 Sobic009G133100 Sobic001G392000--Sobic009G133100 Sobic001G392000--Sobic004G126200 Sobic001G303600--Sobic001G392000 Sobic001G303600--Sobic001G160400 Sobic001G303600--Sobic004G126200 Sobic001G303600--Sobic008G010700 Sobic001G303600--Sobic003G270000 Sobic001G303600--Sobic005G205550 Sobic001G303600--Sobic004G012200 Sobic001G303600--Sobic003G238200 Sobic005G154800 Sobic005G154800 Sobic001G303600--Sobic005G154800 Sobic004G072400--Sobic009G133100 Sobic001G058000 Sobic001G058000 Sobic004G072400--Sobic001G058000 Sobic001G364200 Sobic001G364200 Sobic004G072400--Sobic001G364200 Sobic004G072400--Sobic007G131300 Sobic008G055650 Sobic008G055650 Sobic004G072400--Sobic008G055650 Sobic004G072400--Sobic004G101100 Sobic005G050900 Sobic005G050900 Sobic004G072400--Sobic005G050900 Sobic004G072400--Sobic001G392000 Sobic004G233900 Sobic004G233900 Sobic004G072400--Sobic004G233900 Sobic004G126200--Sobic003G238200 Sobic004G126200--Sobic003G270000 Sobic004G126200--Sobic001G303600 Sobic008G055700 Sobic008G055700 Sobic004G126200--Sobic008G055700 Sobic004G126200--Sobic005G154800 Sobic007G148100 Sobic007G148100 Sobic004G126200--Sobic007G148100 Sobic004G162700 Sobic004G162700 Sobic004G126200--Sobic004G162700 Sobic004G126200--Sobic001G392000 Sobic004G126200--Sobic008G010700 Sobic006G057300 Sobic006G057300 Sobic004G101100--Sobic006G057300 Sobic006G194700 Sobic006G194700 Sobic004G101100--Sobic006G194700 Sobic004G101100--Sobic004G072400 Sobic004G101100--Sobic004G233900 Sobic004G101100--Sobic009G133100 Sobic004G101100--Sobic001G160400 Sobic004G101100--Sobic001G058000 Sobic004G101100--Sobic008G010700 Sobic002G122900 Sobic002G122900 Sobic004G101100--Sobic002G122900 Sobic001G160400--Sobic001G303600 Sobic001G160400--Sobic004G101100 Sobic001G160400--Sobic004G072400 Sobic001G160400--Sobic001G392000 Sobic001G160400--Sobic006G057300 Sobic003G125000 Sobic003G125000 Sobic001G160400--Sobic003G125000 Sobic001G160400--Sobic008G010700 Sobic001G160400--Sobic006G194700 Sobic001G160400--Sobic001G058000 Sobic003G238200--Sobic004G126200 Sobic003G238200--Sobic003G270000 Sobic003G238200--Sobic005G154800 Sobic003G238200--Sobic001G303600 Sobic003G238200--Sobic001G392000 Sobic003G238200--Sobic007G148100 Sobic003G238200--Sobic008G010700 Sobic003G238200--Sobic008G055700 Sobic003G238200--Sobic004G162700 Sobic004G012200--Sobic001G303600 Sobic004G012200--Sobic001G392000 Sobic004G012200--Sobic008G010700 Sobic004G012200--Sobic003G270000 Sobic004G012200--Sobic001G160400 Sobic004G012200--Sobic004G126200 Sobic008G078800 Sobic008G078800 Sobic004G012200--Sobic008G078800 Sobic004G012200--Sobic004G072400 Sobic004G012200--Sobic004G156100 Sobic001G437600 Sobic001G437600 Sobic005G219900--Sobic001G437600 Sobic005G040950 Sobic005G040950 Sobic005G219900--Sobic005G040950 Sobic003G339400 Sobic003G339400 Sobic005G219900--Sobic003G339400 Sobic005G219800 Sobic005G219800 Sobic005G219900--Sobic005G219800 Sobic008G147800 Sobic008G147800 Sobic005G219900--Sobic008G147800 Sobic003G289300 Sobic003G289300 Sobic005G219900--Sobic003G289300 Sobic009G258200 Sobic009G258200 Sobic005G219900--Sobic009G258200 Sobic010G010100 Sobic010G010100 Sobic005G219900--Sobic010G010100 Sobic005G205000 Sobic005G205000 Sobic005G219900--Sobic005G205000
Octagon: transcription factors


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