Gene annotation
Transcriptome id Sobic.006G194700.1
Synonym TL4, ATL4, Sb06g026740
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PMX6
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF129
NCBI CDD -
KEGG Orthology K10663; E3 ubiquitin-protein ligase ATL4
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G60220 : TOXICOS EN LEVADURA 4
RAP-DB (Rice) LOC_Os04g49700.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010027 , Zm00025a056708
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G101100 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed -
2 Sobic.004G072400 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.001G392000 WD40-like Beta Propeller Repeat family protein, expressed -
4 Sobic.001G058000 - -
5 Sobic.001G160400 integral membrane protein DUF6 containing protein, expressed -
6 Sobic.004G233900 CRAL/TRIO domain containing protein, expressed -
7 Sobic.006G069400 expressed protein -
8 Sobic.008G010700 RGH1A, putative, expressed -
9 Sobic.005G005800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@laccase-23 precursor, putative, expressed K05909: laccase
10 Sobic.001G303600 respiratory burst oxidase protein B, putative, expressed -
11 Sobic.001G479600 B3 DNA binding domain containing protein, expressed -
12 Sobic.009G133100 cytochrome P450 72A1, putative, expressed -
13 Sobic.002G241700 phosphatidylinositol transfer, putative, expressed -
14 Sobic.003G212800 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
15 Sobic.001G086200 COBRA, putative, expressed -
16 Sobic.007G003000 no apical meristem protein, putative, expressed -
17 Sobic.006G057300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@leucoanthocyanidin dioxygenase, putative, expressed -
18 Sobic.003G238200 receptor-like protein kinase, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
19 Sobic.004G126200 expressed protein -
20 Sobic.005G219900 NB-ARC domain containing protein, expressed -


Gene co-expression network
sample Sobic006G194700 Sobic006G194700 Sobic004G101100 Sobic004G101100 Sobic006G194700--Sobic004G101100 Sobic004G072400 Sobic004G072400 Sobic006G194700--Sobic004G072400 Sobic001G392000 Sobic001G392000 Sobic006G194700--Sobic001G392000 Sobic001G058000 Sobic001G058000 Sobic006G194700--Sobic001G058000 Sobic001G160400 Sobic001G160400 Sobic006G194700--Sobic001G160400 Sobic004G233900 Sobic004G233900 Sobic006G194700--Sobic004G233900 Sobic006G069400 Sobic006G069400 Sobic006G194700--Sobic006G069400 Sobic008G010700 Sobic008G010700 Sobic006G194700--Sobic008G010700 Sobic005G005800 Sobic005G005800 Sobic006G194700--Sobic005G005800 Sobic006G057300 Sobic006G057300 Sobic004G101100--Sobic006G057300 Sobic004G101100--Sobic006G194700 Sobic004G101100--Sobic004G072400 Sobic004G101100--Sobic004G233900 Sobic009G133100 Sobic009G133100 Sobic004G101100--Sobic009G133100 Sobic004G101100--Sobic001G160400 Sobic004G101100--Sobic001G058000 Sobic004G101100--Sobic008G010700 Sobic002G122900 Sobic002G122900 Sobic004G101100--Sobic002G122900 Sobic004G072400--Sobic009G133100 Sobic004G072400--Sobic001G058000 Sobic001G364200 Sobic001G364200 Sobic004G072400--Sobic001G364200 Sobic007G131300 Sobic007G131300 Sobic004G072400--Sobic007G131300 Sobic008G055650 Sobic008G055650 Sobic004G072400--Sobic008G055650 Sobic004G072400--Sobic004G101100 Sobic005G050900 Sobic005G050900 Sobic004G072400--Sobic005G050900 Sobic004G072400--Sobic001G392000 Sobic004G072400--Sobic004G233900 Sobic001G303600 Sobic001G303600 Sobic001G392000--Sobic001G303600 Sobic004G156100 Sobic004G156100 Sobic001G392000--Sobic004G156100 Sobic003G270000 Sobic003G270000 Sobic001G392000--Sobic003G270000 Sobic001G392000--Sobic004G072400 Sobic001G392000--Sobic008G010700 Sobic005G205550 Sobic005G205550 Sobic001G392000--Sobic005G205550 Sobic001G392000--Sobic007G131300 Sobic001G392000--Sobic009G133100 Sobic004G126200 Sobic004G126200 Sobic001G392000--Sobic004G126200 Sobic001G058000--Sobic004G072400 Sobic001G058000--Sobic009G133100 Sobic001G058000--Sobic004G233900 Sobic001G058000--Sobic001G364200 Sobic009G190900 Sobic009G190900 Sobic001G058000--Sobic009G190900 Sobic001G058000--Sobic005G050900 Sobic001G058000--Sobic004G101100 Sobic001G058000--Sobic007G131300 Sobic001G058000--Sobic005G005800 Sobic001G160400--Sobic001G303600 Sobic001G160400--Sobic004G101100 Sobic001G160400--Sobic004G072400 Sobic001G160400--Sobic001G392000 Sobic001G160400--Sobic006G057300 Sobic003G125000 Sobic003G125000 Sobic001G160400--Sobic003G125000 Sobic001G160400--Sobic008G010700 Sobic001G160400--Sobic006G194700 Sobic001G160400--Sobic001G058000 Sobic004G233900--Sobic009G133100 Sobic004G233900--Sobic004G072400 Sobic004G233900--Sobic001G058000 Sobic004G233900--Sobic004G101100 Sobic004G233900--Sobic001G364200 Sobic004G233900--Sobic007G131300 Sobic004G133301 Sobic004G133301 Sobic004G233900--Sobic004G133301 Sobic001G270200 Sobic001G270200 Sobic004G233900--Sobic001G270200 Sobic001G393600 Sobic001G393600 Sobic004G233900--Sobic001G393600 Sobic003G212800 Sobic003G212800 Sobic006G069400--Sobic003G212800 Sobic007G193500 Sobic007G193500 Sobic006G069400--Sobic007G193500 Sobic006G069400--Sobic009G133100 Sobic001G022000 Sobic001G022000 Sobic006G069400--Sobic001G022000 Sobic005G030200 Sobic005G030200 Sobic006G069400--Sobic005G030200 Sobic008G045232 Sobic008G045232 Sobic006G069400--Sobic008G045232 Sobic005G085800 Sobic005G085800 Sobic006G069400--Sobic005G085800 Sobic002G289701 Sobic002G289701 Sobic006G069400--Sobic002G289701 Sobic009G196100 Sobic009G196100 Sobic006G069400--Sobic009G196100 Sobic008G010700--Sobic001G392000 Sobic008G010700--Sobic001G303600 Sobic008G010700--Sobic004G072400 Sobic008G010700--Sobic004G126200 Sobic008G010700--Sobic004G101100 Sobic008G010700--Sobic001G160400 Sobic003G238200 Sobic003G238200 Sobic008G010700--Sobic003G238200 Sobic004G012200 Sobic004G012200 Sobic008G010700--Sobic004G012200 Sobic005G219900 Sobic005G219900 Sobic008G010700--Sobic005G219900 Sobic005G005800--Sobic004G072400 Sobic005G005800--Sobic001G058000 Sobic005G005800--Sobic001G392000 Sobic005G005800--Sobic006G194700 Sobic005G005800--Sobic001G303600 Sobic007G003000 Sobic007G003000 Sobic005G005800--Sobic007G003000 Sobic005G005800--Sobic003G238200 Sobic005G005800--Sobic009G133100 Sobic005G005800--Sobic005G205550
Octagon: transcription factors


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