Gene annotation
Transcriptome id Sobic.001G086200.1
Synonym Sb01g007760, COB
Functional annotation COBRA, putative, expressed
UniProt Q84KI4
Pfam PF04833
Panther DB PTHR31673
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016049; cell growth GO:0010215cellulose microfibril organization


Orthologs (automatic annotation)
TAIR AT5G60920 : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
RAP-DB (Rice) LOC_Os05g32110.1 : COBRA, putative, expressed
MaizeGDB (Corn) Zm00025a016781 , Zm00025a005122 , Zm00025a026522 , Zm00025a048999 , Zm00025a038477 , Zm00025a008196 , Zm00025a043244
Brachypodium KQK13111 , PNT74123 , KQK13144 , KQK13145 , KQK13146
Barley HORVU5Hr1G095910.1 , HORVU5Hr1G095910.5 , HORVU5Hr1G095910.8
Wheat TraesCS6A02G379800 , TraesCS5B02G397000 , TraesCS5B02G397000 , TraesCS5A02G392000 , TraesCS5D02G401900 , TraesCS5B02G396900
Populus PNT00658 , PNT00657 , PNT00656 , PNT00655


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cDNA sequences
Sobic.001G086200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G194700 zinc finger, C3HC4 type domain containing protein, expressed K10663: E3 ubiquitin-protein ligase ATL4
2 Sobic.001G058000 - -
3 Sobic.003G136600 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.004G233900 CRAL/TRIO domain containing protein, expressed -
5 Sobic.007G003000 no apical meristem protein, putative, expressed -
6 Sobic.004G072400 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.004G159600 - -
8 Sobic.001G063500 fasciclin domain containing protein, expressed -
9 Sobic.004G101100 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed -
10 Sobic.005G005800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@laccase-23 precursor, putative, expressed K05909: laccase
11 Sobic.002G075500 CESA8 - cellulose synthase, expressed K10999: cellulose synthase A
12 Sobic.003G212800 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
13 Sobic.001G521900 CHCH domain containing protein, expressed K18183: cytochrome c oxidase assembly protein subunit 19
14 Sobic.001G479600 B3 DNA binding domain containing protein, expressed -
15 Sobic.009G026101 - -
16 Sobic.002G057500 C-Myc-binding protein, putative, expressed -
17 Sobic.009G079100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
18 Sobic.009G133100 cytochrome P450 72A1, putative, expressed -
19 Sobic.001G364200 cytochrome P450, putative, expressed -
20 Sobic.008G097000 oxidoreductase, aldo/keto reductase family protein, putative, expressed K17744: L-galactose dehydrogenase


Gene co-expression network
sample Sobic001G086200 Sobic001G086200 Sobic006G194700 Sobic006G194700 Sobic001G086200--Sobic006G194700 Sobic001G058000 Sobic001G058000 Sobic001G086200--Sobic001G058000 Sobic003G136600 Sobic003G136600 Sobic001G086200--Sobic003G136600 Sobic004G233900 Sobic004G233900 Sobic001G086200--Sobic004G233900 Sobic007G003000 Sobic007G003000 Sobic001G086200--Sobic007G003000 Sobic004G072400 Sobic004G072400 Sobic001G086200--Sobic004G072400 Sobic004G159600 Sobic004G159600 Sobic001G086200--Sobic004G159600 Sobic001G063500 Sobic001G063500 Sobic001G086200--Sobic001G063500 Sobic004G101100 Sobic004G101100 Sobic001G086200--Sobic004G101100 Sobic006G194700--Sobic004G101100 Sobic006G194700--Sobic004G072400 Sobic001G392000 Sobic001G392000 Sobic006G194700--Sobic001G392000 Sobic006G194700--Sobic001G058000 Sobic001G160400 Sobic001G160400 Sobic006G194700--Sobic001G160400 Sobic006G194700--Sobic004G233900 Sobic006G069400 Sobic006G069400 Sobic006G194700--Sobic006G069400 Sobic008G010700 Sobic008G010700 Sobic006G194700--Sobic008G010700 Sobic005G005800 Sobic005G005800 Sobic006G194700--Sobic005G005800 Sobic001G058000--Sobic004G072400 Sobic009G133100 Sobic009G133100 Sobic001G058000--Sobic009G133100 Sobic001G058000--Sobic004G233900 Sobic001G364200 Sobic001G364200 Sobic001G058000--Sobic001G364200 Sobic009G190900 Sobic009G190900 Sobic001G058000--Sobic009G190900 Sobic005G050900 Sobic005G050900 Sobic001G058000--Sobic005G050900 Sobic001G058000--Sobic004G101100 Sobic007G131300 Sobic007G131300 Sobic001G058000--Sobic007G131300 Sobic001G058000--Sobic005G005800 Sobic002G075500 Sobic002G075500 Sobic003G136600--Sobic002G075500 Sobic009G063400 Sobic009G063400 Sobic003G136600--Sobic009G063400 Sobic002G118700 Sobic002G118700 Sobic003G136600--Sobic002G118700 Sobic009G232200 Sobic009G232200 Sobic003G136600--Sobic009G232200 Sobic002G072200 Sobic002G072200 Sobic003G136600--Sobic002G072200 Sobic009G032600 Sobic009G032600 Sobic003G136600--Sobic009G032600 Sobic003G134900 Sobic003G134900 Sobic003G136600--Sobic003G134900 Sobic009G026101 Sobic009G026101 Sobic003G136600--Sobic009G026101 Sobic001G334900 Sobic001G334900 Sobic003G136600--Sobic001G334900 Sobic004G233900--Sobic009G133100 Sobic004G233900--Sobic004G072400 Sobic004G233900--Sobic001G058000 Sobic004G233900--Sobic004G101100 Sobic004G233900--Sobic001G364200 Sobic004G233900--Sobic007G131300 Sobic004G133301 Sobic004G133301 Sobic004G233900--Sobic004G133301 Sobic001G270200 Sobic001G270200 Sobic004G233900--Sobic001G270200 Sobic001G393600 Sobic001G393600 Sobic004G233900--Sobic001G393600 Sobic007G003000--Sobic005G005800 Sobic007G003000--Sobic001G058000 Sobic007G003000--Sobic006G194700 Sobic001G479600 Sobic001G479600 Sobic007G003000--Sobic001G479600 Sobic007G003000--Sobic004G072400 Sobic003G125000 Sobic003G125000 Sobic007G003000--Sobic003G125000 Sobic007G003000--Sobic001G086200 Sobic007G003000--Sobic001G392000 Sobic003G082700 Sobic003G082700 Sobic007G003000--Sobic003G082700 Sobic004G072400--Sobic009G133100 Sobic004G072400--Sobic001G058000 Sobic004G072400--Sobic001G364200 Sobic004G072400--Sobic007G131300 Sobic008G055650 Sobic008G055650 Sobic004G072400--Sobic008G055650 Sobic004G072400--Sobic004G101100 Sobic004G072400--Sobic005G050900 Sobic004G072400--Sobic001G392000 Sobic004G072400--Sobic004G233900 Sobic001G521900 Sobic001G521900 Sobic004G159600--Sobic001G521900 Sobic004G159600--Sobic004G133301 Sobic002G289350 Sobic002G289350 Sobic004G159600--Sobic002G289350 Sobic004G290400 Sobic004G290400 Sobic004G159600--Sobic004G290400 Sobic002G252600 Sobic002G252600 Sobic004G159600--Sobic002G252600 Sobic001G327400 Sobic001G327400 Sobic004G159600--Sobic001G327400 Sobic004G159600--Sobic004G233900 Sobic001G349800 Sobic001G349800 Sobic004G159600--Sobic001G349800 Sobic002G384800 Sobic002G384800 Sobic004G159600--Sobic002G384800 Sobic002G270000 Sobic002G270000 Sobic001G063500--Sobic002G270000 Sobic002G128800 Sobic002G128800 Sobic001G063500--Sobic002G128800 Sobic001G063500--Sobic009G026101 Sobic001G409100 Sobic001G409100 Sobic001G063500--Sobic001G409100 Sobic001G063500--Sobic002G075500 Sobic004G007600 Sobic004G007600 Sobic001G063500--Sobic004G007600 Sobic002G252000 Sobic002G252000 Sobic001G063500--Sobic002G252000 Sobic001G133900 Sobic001G133900 Sobic001G063500--Sobic001G133900 Sobic006G278100 Sobic006G278100 Sobic001G063500--Sobic006G278100 Sobic006G057300 Sobic006G057300 Sobic004G101100--Sobic006G057300 Sobic004G101100--Sobic006G194700 Sobic004G101100--Sobic004G072400 Sobic004G101100--Sobic004G233900 Sobic004G101100--Sobic009G133100 Sobic004G101100--Sobic001G160400 Sobic004G101100--Sobic001G058000 Sobic004G101100--Sobic008G010700 Sobic002G122900 Sobic002G122900 Sobic004G101100--Sobic002G122900
Octagon: transcription factors


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