Gene annotation
Transcriptome id Sobic.005G005800.1
Synonym Sb05g000680, LAC12
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
laccase-23 precursor, putative, expressed
UniProt C5Y313
Pfam PF00394 PF07732 PF07731
Panther DB PTHR11709 PTHR11709:SF85
NCBI CDD -
KEGG Orthology K05909; laccase
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT5G05390 : laccase 12
RAP-DB (Rice) LOC_Os12g01730.1 : laccase-23 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a029611 , Zm00025a033285 , Zm00025a039744 , Zm00025a002044 , Zm00025a027016
Brachypodium KQJ92617 , KQK10391 , KQK22086
Barley HORVU4Hr1G055140.1 , HORVU4Hr1G055140.2 , HORVU5Hr1G047480.10 , HORVU7Hr1G002740.1 , HORVU7Hr1G002740.3 , HORVU7Hr1G002740.4 , HORVU7Hr1G002740.5 , HORVU3Hr1G088140.1 , HORVU3Hr1G088140.2 , HORVU4Hr1G055140.3 , HORVU4Hr1G055140.5 , HORVU4Hr1G055140.4 , HORVU3Hr1G088150.2 , HORVU3Hr1G088150.1 , HORVU5Hr1G047480.6 , HORVU5Hr1G047480.7 , HORVU5Hr1G047480.4 , HORVU5Hr1G047480.5 , HORVU5Hr1G047480.2 , HORVU5Hr1G047480.3 , HORVU5Hr1G047480.1 , HORVU5Hr1G047480.8 , HORVU5Hr1G047480.9
Wheat TraesCS5D02G156500 , TraesCS3A02G348000 , TraesCS3B02G379900 , TraesCS3D02G341600 , TraesCS5A02G151400 , TraesCS5B02G149900 , TraesCS6A02G058300 , TraesCS5D02G031400 , TraesCS5A02G025000 , TraesCS4D02G190900 , TraesCS4A02G114700 , TraesCS4B02G189500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G072400 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.001G058000 - -
3 Sobic.001G392000 WD40-like Beta Propeller Repeat family protein, expressed -
4 Sobic.006G194700 zinc finger, C3HC4 type domain containing protein, expressed K10663: E3 ubiquitin-protein ligase ATL4
5 Sobic.001G303600 respiratory burst oxidase protein B, putative, expressed -
6 Sobic.007G003000 no apical meristem protein, putative, expressed -
7 Sobic.003G238200 receptor-like protein kinase, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
8 Sobic.009G133100 cytochrome P450 72A1, putative, expressed -
9 Sobic.005G205550 - -
10 Sobic.008G159150 - -
11 Sobic.005G213700 hydrolase, alpha/beta fold family domain containing protein, expressed -
12 Sobic.004G126200 expressed protein -
13 Sobic.008G010700 RGH1A, putative, expressed -
14 Sobic.003G125000 serpin domain containing protein, putative, expressed K13963: serpin B
15 Sobic.001G160400 integral membrane protein DUF6 containing protein, expressed -
16 Sobic.005G161500 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
17 Sobic.004G101100 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed -
18 Sobic.009G067200 expressed protein -
19 Sobic.008G055650 - -
20 Sobic.004G156100 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic005G005800 Sobic005G005800 Sobic004G072400 Sobic004G072400 Sobic005G005800--Sobic004G072400 Sobic001G058000 Sobic001G058000 Sobic005G005800--Sobic001G058000 Sobic001G392000 Sobic001G392000 Sobic005G005800--Sobic001G392000 Sobic006G194700 Sobic006G194700 Sobic005G005800--Sobic006G194700 Sobic001G303600 Sobic001G303600 Sobic005G005800--Sobic001G303600 Sobic007G003000 Sobic007G003000 Sobic005G005800--Sobic007G003000 Sobic003G238200 Sobic003G238200 Sobic005G005800--Sobic003G238200 Sobic009G133100 Sobic009G133100 Sobic005G005800--Sobic009G133100 Sobic005G205550 Sobic005G205550 Sobic005G005800--Sobic005G205550 Sobic004G072400--Sobic009G133100 Sobic004G072400--Sobic001G058000 Sobic001G364200 Sobic001G364200 Sobic004G072400--Sobic001G364200 Sobic007G131300 Sobic007G131300 Sobic004G072400--Sobic007G131300 Sobic008G055650 Sobic008G055650 Sobic004G072400--Sobic008G055650 Sobic004G101100 Sobic004G101100 Sobic004G072400--Sobic004G101100 Sobic005G050900 Sobic005G050900 Sobic004G072400--Sobic005G050900 Sobic004G072400--Sobic001G392000 Sobic004G233900 Sobic004G233900 Sobic004G072400--Sobic004G233900 Sobic001G058000--Sobic004G072400 Sobic001G058000--Sobic009G133100 Sobic001G058000--Sobic004G233900 Sobic001G058000--Sobic001G364200 Sobic009G190900 Sobic009G190900 Sobic001G058000--Sobic009G190900 Sobic001G058000--Sobic005G050900 Sobic001G058000--Sobic004G101100 Sobic001G058000--Sobic007G131300 Sobic001G058000--Sobic005G005800 Sobic001G392000--Sobic001G303600 Sobic004G156100 Sobic004G156100 Sobic001G392000--Sobic004G156100 Sobic003G270000 Sobic003G270000 Sobic001G392000--Sobic003G270000 Sobic001G392000--Sobic004G072400 Sobic008G010700 Sobic008G010700 Sobic001G392000--Sobic008G010700 Sobic001G392000--Sobic005G205550 Sobic001G392000--Sobic007G131300 Sobic001G392000--Sobic009G133100 Sobic004G126200 Sobic004G126200 Sobic001G392000--Sobic004G126200 Sobic006G194700--Sobic004G101100 Sobic006G194700--Sobic004G072400 Sobic006G194700--Sobic001G392000 Sobic006G194700--Sobic001G058000 Sobic001G160400 Sobic001G160400 Sobic006G194700--Sobic001G160400 Sobic006G194700--Sobic004G233900 Sobic006G069400 Sobic006G069400 Sobic006G194700--Sobic006G069400 Sobic006G194700--Sobic008G010700 Sobic006G194700--Sobic005G005800 Sobic001G303600--Sobic001G392000 Sobic001G303600--Sobic001G160400 Sobic001G303600--Sobic004G126200 Sobic001G303600--Sobic008G010700 Sobic001G303600--Sobic003G270000 Sobic001G303600--Sobic005G205550 Sobic004G012200 Sobic004G012200 Sobic001G303600--Sobic004G012200 Sobic001G303600--Sobic003G238200 Sobic005G154800 Sobic005G154800 Sobic001G303600--Sobic005G154800 Sobic007G003000--Sobic005G005800 Sobic007G003000--Sobic001G058000 Sobic007G003000--Sobic006G194700 Sobic001G479600 Sobic001G479600 Sobic007G003000--Sobic001G479600 Sobic007G003000--Sobic004G072400 Sobic003G125000 Sobic003G125000 Sobic007G003000--Sobic003G125000 Sobic001G086200 Sobic001G086200 Sobic007G003000--Sobic001G086200 Sobic007G003000--Sobic001G392000 Sobic003G082700 Sobic003G082700 Sobic007G003000--Sobic003G082700 Sobic003G238200--Sobic004G126200 Sobic003G238200--Sobic003G270000 Sobic003G238200--Sobic005G154800 Sobic003G238200--Sobic001G303600 Sobic003G238200--Sobic001G392000 Sobic007G148100 Sobic007G148100 Sobic003G238200--Sobic007G148100 Sobic003G238200--Sobic008G010700 Sobic008G055700 Sobic008G055700 Sobic003G238200--Sobic008G055700 Sobic004G162700 Sobic004G162700 Sobic003G238200--Sobic004G162700 Sobic009G133100--Sobic007G131300 Sobic009G133100--Sobic004G072400 Sobic010G065500 Sobic010G065500 Sobic009G133100--Sobic010G065500 Sobic009G133100--Sobic001G364200 Sobic002G070400 Sobic002G070400 Sobic009G133100--Sobic002G070400 Sobic009G133100--Sobic008G055650 Sobic005G030200 Sobic005G030200 Sobic009G133100--Sobic005G030200 Sobic008G147800 Sobic008G147800 Sobic009G133100--Sobic008G147800 Sobic005G005100 Sobic005G005100 Sobic009G133100--Sobic005G005100 Sobic005G205550--Sobic001G303600 Sobic005G205550--Sobic001G392000 Sobic005G205550--Sobic005G154800 Sobic005G205550--Sobic003G270000 Sobic005G205550--Sobic004G126200 Sobic005G205550--Sobic003G238200 Sobic005G205550--Sobic001G160400 Sobic005G205550--Sobic004G072400 Sobic005G205550--Sobic005G005800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.