Gene annotation
Transcriptome id Sobic.001G392000.1
Synonym Sb01g037140
Functional annotation WD40-like Beta Propeller Repeat family protein, expressed
UniProt A0A1B6QNL5
Pfam PF07676
Panther DB PTHR32161 PTHR32161:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21680 : DPP6 N-terminal domain-like protein
RAP-DB (Rice) LOC_Os03g19990.1 : WD40-like Beta Propeller Repeat family protein, expressed
MaizeGDB (Corn) Zm00025a055444
Brachypodium PNT65726 , PNT65727 , KQJ92896 , KQJ92897 , KQJ92894 , KQJ92895
Barley HORVU7Hr1G001020.23 , HORVU7Hr1G001020.22 , HORVU7Hr1G001020.21 , HORVU7Hr1G001020.20 , HORVU7Hr1G001020.6 , HORVU7Hr1G001020.11 , HORVU7Hr1G001020.17 , HORVU7Hr1G001020.18 , HORVU7Hr1G001020.19 , HORVU7Hr1G001020.16
Wheat TraesCS6A02G057900 , TraesCS4A02G124500 , TraesCS6D02G058200 , TraesCS7D02G434600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G303600 respiratory burst oxidase protein B, putative, expressed -
2 Sobic.004G156100 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.003G270000 - -
4 Sobic.004G072400 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.008G010700 RGH1A, putative, expressed -
6 Sobic.005G205550 - -
7 Sobic.007G131300 endoglucanase, putative, expressed -
8 Sobic.009G133100 cytochrome P450 72A1, putative, expressed -
9 Sobic.004G126200 expressed protein -
10 Sobic.003G238200 receptor-like protein kinase, putative, expressed K04733: interleukin-1 receptor-associated kinase 4
11 Sobic.004G012200 phytosulfokine receptor precursor, putative, expressed -
12 Sobic.001G160400 integral membrane protein DUF6 containing protein, expressed -
13 Sobic.006G194700 zinc finger, C3HC4 type domain containing protein, expressed K10663: E3 ubiquitin-protein ligase ATL4
14 Sobic.001G058000 - -
15 Sobic.005G005800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@laccase-23 precursor, putative, expressed K05909: laccase
16 Sobic.004G101100 STIGL3 - Stigma-specific Stig1 family protein precursor, putative, expressed -
17 Sobic.005G219900 NB-ARC domain containing protein, expressed -
18 Sobic.008G055650 - -
19 Sobic.008G134700 chloroplast nucleoid DNA binding protein, putative, expressed -
20 Sobic.006G069400 expressed protein -


Gene co-expression network
sample Sobic001G392000 Sobic001G392000 Sobic001G303600 Sobic001G303600 Sobic001G392000--Sobic001G303600 Sobic004G156100 Sobic004G156100 Sobic001G392000--Sobic004G156100 Sobic003G270000 Sobic003G270000 Sobic001G392000--Sobic003G270000 Sobic004G072400 Sobic004G072400 Sobic001G392000--Sobic004G072400 Sobic008G010700 Sobic008G010700 Sobic001G392000--Sobic008G010700 Sobic005G205550 Sobic005G205550 Sobic001G392000--Sobic005G205550 Sobic007G131300 Sobic007G131300 Sobic001G392000--Sobic007G131300 Sobic009G133100 Sobic009G133100 Sobic001G392000--Sobic009G133100 Sobic004G126200 Sobic004G126200 Sobic001G392000--Sobic004G126200 Sobic001G303600--Sobic001G392000 Sobic001G160400 Sobic001G160400 Sobic001G303600--Sobic001G160400 Sobic001G303600--Sobic004G126200 Sobic001G303600--Sobic008G010700 Sobic001G303600--Sobic003G270000 Sobic001G303600--Sobic005G205550 Sobic004G012200 Sobic004G012200 Sobic001G303600--Sobic004G012200 Sobic003G238200 Sobic003G238200 Sobic001G303600--Sobic003G238200 Sobic005G154800 Sobic005G154800 Sobic001G303600--Sobic005G154800 Sobic004G156100--Sobic001G392000 Sobic004G156100--Sobic007G131300 Sobic004G156100--Sobic009G133100 Sobic008G055650 Sobic008G055650 Sobic004G156100--Sobic008G055650 Sobic008G147800 Sobic008G147800 Sobic004G156100--Sobic008G147800 Sobic009G196100 Sobic009G196100 Sobic004G156100--Sobic009G196100 Sobic004G156100--Sobic004G072400 Sobic010G065500 Sobic010G065500 Sobic004G156100--Sobic010G065500 Sobic005G050900 Sobic005G050900 Sobic004G156100--Sobic005G050900 Sobic003G270000--Sobic004G126200 Sobic003G270000--Sobic001G392000 Sobic003G270000--Sobic001G303600 Sobic003G270000--Sobic005G154800 Sobic003G270000--Sobic003G238200 Sobic008G134700 Sobic008G134700 Sobic003G270000--Sobic008G134700 Sobic008G055700 Sobic008G055700 Sobic003G270000--Sobic008G055700 Sobic010G032500 Sobic010G032500 Sobic003G270000--Sobic010G032500 Sobic007G119750 Sobic007G119750 Sobic003G270000--Sobic007G119750 Sobic004G072400--Sobic009G133100 Sobic001G058000 Sobic001G058000 Sobic004G072400--Sobic001G058000 Sobic001G364200 Sobic001G364200 Sobic004G072400--Sobic001G364200 Sobic004G072400--Sobic007G131300 Sobic004G072400--Sobic008G055650 Sobic004G101100 Sobic004G101100 Sobic004G072400--Sobic004G101100 Sobic004G072400--Sobic005G050900 Sobic004G072400--Sobic001G392000 Sobic004G233900 Sobic004G233900 Sobic004G072400--Sobic004G233900 Sobic008G010700--Sobic001G392000 Sobic008G010700--Sobic001G303600 Sobic008G010700--Sobic004G072400 Sobic008G010700--Sobic004G126200 Sobic008G010700--Sobic004G101100 Sobic008G010700--Sobic001G160400 Sobic008G010700--Sobic003G238200 Sobic008G010700--Sobic004G012200 Sobic005G219900 Sobic005G219900 Sobic008G010700--Sobic005G219900 Sobic005G205550--Sobic001G303600 Sobic005G205550--Sobic001G392000 Sobic005G205550--Sobic005G154800 Sobic005G205550--Sobic003G270000 Sobic005G205550--Sobic004G126200 Sobic005G205550--Sobic003G238200 Sobic005G205550--Sobic001G160400 Sobic005G205550--Sobic004G072400 Sobic005G005800 Sobic005G005800 Sobic005G205550--Sobic005G005800 Sobic007G131300--Sobic010G065500 Sobic007G131300--Sobic008G147800 Sobic003G083100 Sobic003G083100 Sobic007G131300--Sobic003G083100 Sobic007G131300--Sobic009G133100 Sobic005G030200 Sobic005G030200 Sobic007G131300--Sobic005G030200 Sobic009G258200 Sobic009G258200 Sobic007G131300--Sobic009G258200 Sobic007G131300--Sobic008G055650 Sobic002G063500 Sobic002G063500 Sobic007G131300--Sobic002G063500 Sobic007G131300--Sobic005G050900 Sobic009G133100--Sobic007G131300 Sobic009G133100--Sobic004G072400 Sobic009G133100--Sobic010G065500 Sobic009G133100--Sobic001G364200 Sobic002G070400 Sobic002G070400 Sobic009G133100--Sobic002G070400 Sobic009G133100--Sobic008G055650 Sobic009G133100--Sobic005G030200 Sobic009G133100--Sobic008G147800 Sobic005G005100 Sobic005G005100 Sobic009G133100--Sobic005G005100 Sobic004G126200--Sobic003G238200 Sobic004G126200--Sobic003G270000 Sobic004G126200--Sobic001G303600 Sobic004G126200--Sobic008G055700 Sobic004G126200--Sobic005G154800 Sobic007G148100 Sobic007G148100 Sobic004G126200--Sobic007G148100 Sobic004G162700 Sobic004G162700 Sobic004G126200--Sobic004G162700 Sobic004G126200--Sobic001G392000 Sobic004G126200--Sobic008G010700
Octagon: transcription factors


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