Gene annotation
Transcriptome id Sobic.006G092200.1
Synonym Sb06g017730, ATL3
Functional annotation RING-H2 finger protein ATL3F, putative, expressed
UniProt C5Y966
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF147
NCBI CDD -
KEGG Orthology K16286; E3 ubiquitin-protein ligase EL5
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72310 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g09310.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011255
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G273300 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
2 Sobic.004G227800 CBS domain-containing protein, putative, expressed -
3 Sobic.006G256900 dirigent-like protein pDIR17, putative, expressed -
4 Sobic.009G160800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.001G237800 expansin precursor, putative, expressed -
6 Sobic.009G219200 expressed protein -
7 Sobic.003G140700 peroxidase precursor, putative, expressed -
8 Sobic.001G238200 expansin precursor, putative, expressed -
9 Sobic.001G438200 expressed protein -
10 Sobic.010G148800 WRKY31, expressed -
11 Sobic.002G255000 AIR12, putative, expressed -
12 Sobic.001G238000 expansin precursor, putative, expressed -
13 Sobic.008G019900 - -
14 Sobic.003G064800 dirigent, putative, expressed -
15 Sobic.002G001700 ZOS7-01 - C2H2 zinc finger protein, expressed -
16 Sobic.003G349400 expressed protein -
17 Sobic.004G038700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR5 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
18 Sobic.003G228600 cytochrome P450 72A1, putative, expressed -
19 Sobic.009G199001 - -
20 Sobic.004G322100 hypro1, putative, expressed -


Gene co-expression network
sample Sobic006G092200 Sobic006G092200 Sobic006G273300 Sobic006G273300 Sobic006G092200--Sobic006G273300 Sobic004G227800 Sobic004G227800 Sobic006G092200--Sobic004G227800 Sobic006G256900 Sobic006G256900 Sobic006G092200--Sobic006G256900 Sobic009G160800 Sobic009G160800 Sobic006G092200--Sobic009G160800 Sobic001G237800 Sobic001G237800 Sobic006G092200--Sobic001G237800 Sobic009G219200 Sobic009G219200 Sobic006G092200--Sobic009G219200 Sobic003G140700 Sobic003G140700 Sobic006G092200--Sobic003G140700 Sobic001G238200 Sobic001G238200 Sobic006G092200--Sobic001G238200 Sobic001G438200 Sobic001G438200 Sobic006G092200--Sobic001G438200 Sobic002G255000 Sobic002G255000 Sobic006G273300--Sobic002G255000 Sobic006G273300--Sobic001G438200 Sobic007G008600 Sobic007G008600 Sobic006G273300--Sobic007G008600 Sobic006G273300--Sobic003G140700 Sobic003G064800 Sobic003G064800 Sobic006G273300--Sobic003G064800 Sobic006G225500 Sobic006G225500 Sobic006G273300--Sobic006G225500 Sobic005G127400 Sobic005G127400 Sobic006G273300--Sobic005G127400 Sobic004G029100 Sobic004G029100 Sobic006G273300--Sobic004G029100 Sobic002G183700 Sobic002G183700 Sobic006G273300--Sobic002G183700 Sobic004G349125 Sobic004G349125 Sobic004G227800--Sobic004G349125 Sobic003G404600 Sobic003G404600 Sobic004G227800--Sobic003G404600 Sobic004G042000 Sobic004G042000 Sobic004G227800--Sobic004G042000 Sobic001G161500 Sobic001G161500 Sobic004G227800--Sobic001G161500 Sobic006G197100 Sobic006G197100 Sobic004G227800--Sobic006G197100 Sobic001G302600 Sobic001G302600 Sobic004G227800--Sobic001G302600 Sobic001G416200 Sobic001G416200 Sobic004G227800--Sobic001G416200 Sobic003G228600 Sobic003G228600 Sobic004G227800--Sobic003G228600 Sobic006G125100 Sobic006G125100 Sobic004G227800--Sobic006G125100 Sobic010G148800 Sobic010G148800 Sobic006G256900--Sobic010G148800 Sobic005G065900 Sobic005G065900 Sobic006G256900--Sobic005G065900 Sobic007G050200 Sobic007G050200 Sobic006G256900--Sobic007G050200 Sobic009G199001 Sobic009G199001 Sobic006G256900--Sobic009G199001 Sobic006G256900--Sobic006G197100 Sobic009G221500 Sobic009G221500 Sobic006G256900--Sobic009G221500 Sobic006G256900--Sobic003G140700 Sobic004G322100 Sobic004G322100 Sobic006G256900--Sobic004G322100 Sobic001G058300 Sobic001G058300 Sobic006G256900--Sobic001G058300 Sobic009G160800--Sobic001G238200 Sobic002G377700 Sobic002G377700 Sobic009G160800--Sobic002G377700 Sobic009G160800--Sobic001G058300 Sobic009G160800--Sobic006G273300 Sobic009G181600 Sobic009G181600 Sobic009G160800--Sobic009G181600 Sobic006G106900 Sobic006G106900 Sobic009G160800--Sobic006G106900 Sobic004G306900 Sobic004G306900 Sobic009G160800--Sobic004G306900 Sobic010G234500 Sobic010G234500 Sobic009G160800--Sobic010G234500 Sobic009G160800--Sobic002G255000 Sobic001G237800--Sobic009G219200 Sobic010G162800 Sobic010G162800 Sobic001G237800--Sobic010G162800 Sobic001G237800--Sobic003G140700 Sobic001G237800--Sobic002G255000 Sobic001G237800--Sobic005G127400 Sobic001G238000 Sobic001G238000 Sobic001G237800--Sobic001G238000 Sobic001G237800--Sobic003G064800 Sobic001G237800--Sobic001G238200 Sobic009G035900 Sobic009G035900 Sobic001G237800--Sobic009G035900 Sobic009G219200--Sobic003G140700 Sobic009G219200--Sobic001G438200 Sobic009G219200--Sobic001G237800 Sobic009G219200--Sobic002G255000 Sobic009G219200--Sobic003G064800 Sobic009G219200--Sobic004G306900 Sobic006G079300 Sobic006G079300 Sobic009G219200--Sobic006G079300 Sobic009G219200--Sobic001G238000 Sobic009G219200--Sobic001G238200 Sobic003G140700--Sobic009G219200 Sobic003G140700--Sobic003G064800 Sobic003G140700--Sobic006G225500 Sobic003G140700--Sobic004G322100 Sobic003G140700--Sobic001G438200 Sobic003G140700--Sobic002G255000 Sobic003G140700--Sobic001G238200 Sobic003G140700--Sobic005G127400 Sobic004G110700 Sobic004G110700 Sobic003G140700--Sobic004G110700 Sobic001G238200--Sobic003G064800 Sobic001G238200--Sobic003G140700 Sobic001G238200--Sobic002G255000 Sobic001G238200--Sobic004G306900 Sobic001G238200--Sobic001G238000 Sobic001G238200--Sobic010G234500 Sobic001G238200--Sobic006G106900 Sobic001G238200--Sobic001G058300 Sobic004G323300 Sobic004G323300 Sobic001G238200--Sobic004G323300 Sobic001G438200--Sobic003G064800 Sobic001G438200--Sobic002G255000 Sobic001G438200--Sobic003G140700 Sobic003G319400 Sobic003G319400 Sobic001G438200--Sobic003G319400 Sobic001G438200--Sobic009G219200 Sobic001G438200--Sobic006G106900 Sobic001G438200--Sobic004G306900 Sobic001G438200--Sobic006G273300 Sobic001G438200--Sobic004G322100
Octagon: transcription factors


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