Gene annotation
Transcriptome id Sobic.010G132000.1
Synonym Sb10g012190
Functional annotation arabinogalactan peptide 23 precursor, putative, expressed
UniProt C5Z1N4
Pfam -
Panther DB PTHR34672
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41905 : -
RAP-DB (Rice) LOC_Os06g21410.1 : arabinogalactan peptide 23 precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU6Hr1G070740.1
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G039000 DUF567 domain containing protein, putative, expressed -
2 Sobic.001G288900 -(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
3 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
4 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
5 Sobic.002G347100 expressed protein -
6 Sobic.006G249300 expressed protein -
7 Sobic.003G138300 expressed protein -
8 Sobic.009G229000 expressed protein -
9 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
10 Sobic.001G481500 - -
11 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
12 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
13 Sobic.010G271501 - -
14 Sobic.001G169500 - -
15 Sobic.001G325000 expressed protein -
16 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
17 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
18 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
19 Sobic.003G258600 expressed protein -
20 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic010G132000 Sobic010G132000 Sobic001G039000 Sobic001G039000 Sobic010G132000--Sobic001G039000 Sobic001G288900 Sobic001G288900 Sobic010G132000--Sobic001G288900 Sobic003G367200 Sobic003G367200 Sobic010G132000--Sobic003G367200 Sobic004G336500 Sobic004G336500 Sobic010G132000--Sobic004G336500 Sobic002G347100 Sobic002G347100 Sobic010G132000--Sobic002G347100 Sobic006G249300 Sobic006G249300 Sobic010G132000--Sobic006G249300 Sobic003G138300 Sobic003G138300 Sobic010G132000--Sobic003G138300 Sobic009G229000 Sobic009G229000 Sobic010G132000--Sobic009G229000 Sobic001G309600 Sobic001G309600 Sobic010G132000--Sobic001G309600 Sobic001G039000--Sobic010G132000 Sobic001G039000--Sobic001G288900 Sobic003G315800 Sobic003G315800 Sobic001G039000--Sobic003G315800 Sobic001G039000--Sobic002G347100 Sobic003G258600 Sobic003G258600 Sobic001G039000--Sobic003G258600 Sobic009G200566 Sobic009G200566 Sobic001G039000--Sobic009G200566 Sobic007G165000 Sobic007G165000 Sobic001G039000--Sobic007G165000 Sobic010G213800 Sobic010G213800 Sobic001G039000--Sobic010G213800 Sobic009G176500 Sobic009G176500 Sobic001G039000--Sobic009G176500 Sobic001G288900--Sobic007G165000 Sobic001G288900--Sobic010G132000 Sobic001G288900--Sobic001G039000 Sobic001G270200 Sobic001G270200 Sobic001G288900--Sobic001G270200 Sobic010G271501 Sobic010G271501 Sobic001G288900--Sobic010G271501 Sobic008G009450 Sobic008G009450 Sobic001G288900--Sobic008G009450 Sobic006G240650 Sobic006G240650 Sobic001G288900--Sobic006G240650 Sobic001G288900--Sobic003G258600 Sobic001G044100 Sobic001G044100 Sobic001G288900--Sobic001G044100 Sobic003G367200--Sobic004G336500 Sobic006G275200 Sobic006G275200 Sobic003G367200--Sobic006G275200 Sobic003G086600 Sobic003G086600 Sobic003G367200--Sobic003G086600 Sobic003G382800 Sobic003G382800 Sobic003G367200--Sobic003G382800 Sobic001G397200 Sobic001G397200 Sobic003G367200--Sobic001G397200 Sobic004G280200 Sobic004G280200 Sobic003G367200--Sobic004G280200 Sobic007G015600 Sobic007G015600 Sobic003G367200--Sobic007G015600 Sobic001G140900 Sobic001G140900 Sobic003G367200--Sobic001G140900 Sobic003G369100 Sobic003G369100 Sobic003G367200--Sobic003G369100 Sobic009G069800 Sobic009G069800 Sobic004G336500--Sobic009G069800 Sobic004G336500--Sobic003G367200 Sobic001G169500 Sobic001G169500 Sobic004G336500--Sobic001G169500 Sobic007G008100 Sobic007G008100 Sobic004G336500--Sobic007G008100 Sobic001G112200 Sobic001G112200 Sobic004G336500--Sobic001G112200 Sobic010G225251 Sobic010G225251 Sobic004G336500--Sobic010G225251 Sobic004G336500--Sobic003G382800 Sobic001G280800 Sobic001G280800 Sobic004G336500--Sobic001G280800 Sobic001G138600 Sobic001G138600 Sobic004G336500--Sobic001G138600 Sobic001G430600 Sobic001G430600 Sobic002G347100--Sobic001G430600 Sobic007G166000 Sobic007G166000 Sobic002G347100--Sobic007G166000 Sobic003G202000 Sobic003G202000 Sobic002G347100--Sobic003G202000 Sobic002G347100--Sobic010G132000 Sobic001G481500 Sobic001G481500 Sobic002G347100--Sobic001G481500 Sobic002G215300 Sobic002G215300 Sobic002G347100--Sobic002G215300 Sobic002G347100--Sobic003G367200 Sobic002G057900 Sobic002G057900 Sobic002G347100--Sobic002G057900 Sobic002G203700 Sobic002G203700 Sobic002G347100--Sobic002G203700 Sobic001G139100 Sobic001G139100 Sobic006G249300--Sobic001G139100 Sobic006G249300--Sobic001G169500 Sobic004G100700 Sobic004G100700 Sobic006G249300--Sobic004G100700 Sobic008G186100 Sobic008G186100 Sobic006G249300--Sobic008G186100 Sobic005G011300 Sobic005G011300 Sobic006G249300--Sobic005G011300 Sobic006G249300--Sobic003G086600 Sobic010G259600 Sobic010G259600 Sobic006G249300--Sobic010G259600 Sobic003G084400 Sobic003G084400 Sobic006G249300--Sobic003G084400 Sobic009G183400 Sobic009G183400 Sobic006G249300--Sobic009G183400 Sobic006G032700 Sobic006G032700 Sobic003G138300--Sobic006G032700 Sobic003G138300--Sobic001G309600 Sobic003G138300--Sobic002G215300 Sobic003G138300--Sobic003G367200 Sobic010G032100 Sobic010G032100 Sobic003G138300--Sobic010G032100 Sobic003G138300--Sobic001G397200 Sobic003G138300--Sobic001G481500 Sobic010G031100 Sobic010G031100 Sobic003G138300--Sobic010G031100 Sobic001G149800 Sobic001G149800 Sobic003G138300--Sobic001G149800 Sobic004G166700 Sobic004G166700 Sobic009G229000--Sobic004G166700 Sobic006G092500 Sobic006G092500 Sobic009G229000--Sobic006G092500 Sobic009G229000--Sobic001G139100 Sobic009G035200 Sobic009G035200 Sobic009G229000--Sobic009G035200 Sobic005G051200 Sobic005G051200 Sobic009G229000--Sobic005G051200 Sobic003G345100 Sobic003G345100 Sobic009G229000--Sobic003G345100 Sobic009G229000--Sobic001G169500 Sobic009G229000--Sobic010G259600 Sobic005G063100 Sobic005G063100 Sobic009G229000--Sobic005G063100 Sobic001G309600--Sobic001G397200 Sobic001G309600--Sobic001G481500 Sobic001G309600--Sobic010G032100 Sobic001G309600--Sobic006G032700 Sobic001G309600--Sobic001G149800 Sobic001G309600--Sobic003G138300 Sobic001G309600--Sobic003G086600 Sobic001G309600--Sobic002G215300 Sobic001G481600 Sobic001G481600 Sobic001G309600--Sobic001G481600
Octagon: transcription factors


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