Gene annotation
Transcriptome id Sobic.003G258600.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6Q5E0
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g48950.1 : expressed protein
MaizeGDB (Corn) Zm00025a028024
Brachypodium KQK09207
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G132000 arabinogalactan peptide 23 precursor, putative, expressed -
2 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
3 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
4 Sobic.006G161100 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR11 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
5 Sobic.003G382600 ARGOS, putative, expressed -
6 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.001G039000 DUF567 domain containing protein, putative, expressed -
8 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
9 Sobic.009G075900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
10 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.001G288900 -(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
12 Sobic.009G179950 - -
13 Sobic.009G153100 zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
14 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
15 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
16 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.009G164600 ZOS1-14 - C2H2 zinc finger protein, expressed -
20 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease


Gene co-expression network
sample Sobic003G258600 Sobic003G258600 Sobic010G132000 Sobic010G132000 Sobic003G258600--Sobic010G132000 Sobic003G297600 Sobic003G297600 Sobic003G258600--Sobic003G297600 Sobic002G183200 Sobic002G183200 Sobic003G258600--Sobic002G183200 Sobic006G161100 Sobic006G161100 Sobic003G258600--Sobic006G161100 Sobic003G382600 Sobic003G382600 Sobic003G258600--Sobic003G382600 Sobic007G177100 Sobic007G177100 Sobic003G258600--Sobic007G177100 Sobic001G039000 Sobic001G039000 Sobic003G258600--Sobic001G039000 Sobic003G334600 Sobic003G334600 Sobic003G258600--Sobic003G334600 Sobic009G075900 Sobic009G075900 Sobic003G258600--Sobic009G075900 Sobic010G132000--Sobic001G039000 Sobic001G288900 Sobic001G288900 Sobic010G132000--Sobic001G288900 Sobic003G367200 Sobic003G367200 Sobic010G132000--Sobic003G367200 Sobic004G336500 Sobic004G336500 Sobic010G132000--Sobic004G336500 Sobic002G347100 Sobic002G347100 Sobic010G132000--Sobic002G347100 Sobic006G249300 Sobic006G249300 Sobic010G132000--Sobic006G249300 Sobic003G138300 Sobic003G138300 Sobic010G132000--Sobic003G138300 Sobic009G229000 Sobic009G229000 Sobic010G132000--Sobic009G229000 Sobic001G309600 Sobic001G309600 Sobic010G132000--Sobic001G309600 Sobic009G077800 Sobic009G077800 Sobic003G297600--Sobic009G077800 Sobic009G139400 Sobic009G139400 Sobic003G297600--Sobic009G139400 Sobic001G070800 Sobic001G070800 Sobic003G297600--Sobic001G070800 Sobic005G029200 Sobic005G029200 Sobic003G297600--Sobic005G029200 Sobic004G189400 Sobic004G189400 Sobic003G297600--Sobic004G189400 Sobic008G050600 Sobic008G050600 Sobic003G297600--Sobic008G050600 Sobic001G317200 Sobic001G317200 Sobic003G297600--Sobic001G317200 Sobic005G091500 Sobic005G091500 Sobic003G297600--Sobic005G091500 Sobic002G055700 Sobic002G055700 Sobic003G297600--Sobic002G055700 Sobic003G286600 Sobic003G286600 Sobic002G183200--Sobic003G286600 Sobic002G183200--Sobic005G091500 Sobic002G183200--Sobic004G189400 Sobic001G025300 Sobic001G025300 Sobic002G183200--Sobic001G025300 Sobic001G119100 Sobic001G119100 Sobic002G183200--Sobic001G119100 Sobic010G176600 Sobic010G176600 Sobic002G183200--Sobic010G176600 Sobic006G099900 Sobic006G099900 Sobic002G183200--Sobic006G099900 Sobic002G183200--Sobic001G317200 Sobic010G084400 Sobic010G084400 Sobic002G183200--Sobic010G084400 Sobic001G091600 Sobic001G091600 Sobic006G161100--Sobic001G091600 Sobic009G221400 Sobic009G221400 Sobic006G161100--Sobic009G221400 Sobic007G025500 Sobic007G025500 Sobic006G161100--Sobic007G025500 Sobic002G319100 Sobic002G319100 Sobic006G161100--Sobic002G319100 Sobic008G044300 Sobic008G044300 Sobic006G161100--Sobic008G044300 Sobic010G088700 Sobic010G088700 Sobic006G161100--Sobic010G088700 Sobic004G192100 Sobic004G192100 Sobic006G161100--Sobic004G192100 Sobic002G353900 Sobic002G353900 Sobic006G161100--Sobic002G353900 Sobic003G041600 Sobic003G041600 Sobic006G161100--Sobic003G041600 Sobic003G382600--Sobic002G055700 Sobic003G382600--Sobic004G189400 Sobic002G338500 Sobic002G338500 Sobic003G382600--Sobic002G338500 Sobic003G382600--Sobic002G353900 Sobic003G303100 Sobic003G303100 Sobic003G382600--Sobic003G303100 Sobic004G237800 Sobic004G237800 Sobic003G382600--Sobic004G237800 Sobic003G382600--Sobic005G091500 Sobic003G382600--Sobic008G050600 Sobic003G043600 Sobic003G043600 Sobic003G382600--Sobic003G043600 Sobic009G159200 Sobic009G159200 Sobic007G177100--Sobic009G159200 Sobic007G126100 Sobic007G126100 Sobic007G177100--Sobic007G126100 Sobic004G212900 Sobic004G212900 Sobic007G177100--Sobic004G212900 Sobic006G157500 Sobic006G157500 Sobic007G177100--Sobic006G157500 Sobic004G166400 Sobic004G166400 Sobic007G177100--Sobic004G166400 Sobic010G030401 Sobic010G030401 Sobic007G177100--Sobic010G030401 Sobic002G254200 Sobic002G254200 Sobic007G177100--Sobic002G254200 Sobic007G197600 Sobic007G197600 Sobic007G177100--Sobic007G197600 Sobic003G360000 Sobic003G360000 Sobic007G177100--Sobic003G360000 Sobic001G039000--Sobic010G132000 Sobic001G039000--Sobic001G288900 Sobic003G315800 Sobic003G315800 Sobic001G039000--Sobic003G315800 Sobic001G039000--Sobic002G347100 Sobic001G039000--Sobic003G258600 Sobic009G200566 Sobic009G200566 Sobic001G039000--Sobic009G200566 Sobic007G165000 Sobic007G165000 Sobic001G039000--Sobic007G165000 Sobic010G213800 Sobic010G213800 Sobic001G039000--Sobic010G213800 Sobic009G176500 Sobic009G176500 Sobic001G039000--Sobic009G176500 Sobic003G369100 Sobic003G369100 Sobic003G334600--Sobic003G369100 Sobic001G038900 Sobic001G038900 Sobic003G334600--Sobic001G038900 Sobic008G136400 Sobic008G136400 Sobic003G334600--Sobic008G136400 Sobic002G140400 Sobic002G140400 Sobic003G334600--Sobic002G140400 Sobic003G334600--Sobic008G050600 Sobic001G308300 Sobic001G308300 Sobic003G334600--Sobic001G308300 Sobic007G074000 Sobic007G074000 Sobic003G334600--Sobic007G074000 Sobic003G387000 Sobic003G387000 Sobic003G334600--Sobic003G387000 Sobic003G345100 Sobic003G345100 Sobic003G334600--Sobic003G345100 Sobic002G353800 Sobic002G353800 Sobic009G075900--Sobic002G353800 Sobic002G416600 Sobic002G416600 Sobic009G075900--Sobic002G416600 Sobic009G075900--Sobic003G303100 Sobic004G225900 Sobic004G225900 Sobic009G075900--Sobic004G225900 Sobic009G075900--Sobic001G025300 Sobic009G075900--Sobic009G159200 Sobic003G087300 Sobic003G087300 Sobic009G075900--Sobic003G087300 Sobic009G075900--Sobic001G070800 Sobic006G154500 Sobic006G154500 Sobic009G075900--Sobic006G154500
Octagon: transcription factors


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