Gene annotation
Transcriptome id Sobic.007G193500.1
Synonym Sb07g026220, SbSBP13;SbSBP13
Functional annotation Highest expression level in primordial inflorescence (PubMedID : 27501690)
"GW8/OsPL16(Ortholog in rice:Wang et al., 2012)" (PubMedID : 31659910)
OsSPL16 - SBP-box gene family member, expressed
UniProt G5D5A2 , A0A1B6PIM2
Pfam PF03110
Panther DB PTHR31251 PTHR31251:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G50570 : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
RAP-DB (Rice) LOC_Os08g41940.1 : OsSPL16 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a014741 , Zm00025a039285 , Zm00025a047584 , Zm00025a056870 , Zm00025a014306 , Zm00025a030402 , Zm00025a030405
Brachypodium KQK11264 , PNT61614 , PNT61615 , KQJ83945 , PNT73493 , KQJ90930 , KQJ99120
Barley HORVU2Hr1G097610.1 , HORVU2Hr1G097610.2 , HORVU5Hr1G076380.9 , HORVU5Hr1G076380.11 , HORVU5Hr1G076380.10 , HORVU2Hr1G097580.2 , HORVU5Hr1G076380.4 , HORVU5Hr1G076380.6 , HORVU5Hr1G076380.1 , HORVU5Hr1G076380.3 , HORVU5Hr1G076380.2 , HORVU2Hr1G097580.1 , HORVU5Hr1G076380.8 , HORVU0Hr1G039170.6 , HORVU0Hr1G039170.4 , HORVU0Hr1G039170.5 , HORVU0Hr1G039170.8 , HORVU0Hr1G039170.9
Wheat TraesCS2D02G410700 , TraesCS2B02G250900 , TraesCS7D02G261500 , TraesCS2B02G432700 , TraesCS5B02G286000 , TraesCS7A02G260500 , TraesCS5D02G294400 , TraesCS5D02G294400 , TraesCS5A02G286700 , TraesCS5A02G286700 , TraesCS2A02G413900 , TraesCS7B02G158500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G045232 - -
2 Sobic.005G085800 expressed protein -
3 Sobic.002G289701 - -
4 Sobic.008G053000 receptor-like protein kinase 5 precursor, putative, expressed -
5 Sobic.005G030200 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.001G152500 OsFBX387 - F-box domain containing protein, expressed -
7 Sobic.001G189800 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
8 Sobic.007G007650 - -
9 Sobic.001G482500 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
10 Sobic.002G191300 expressed protein -
11 Sobic.005G205000 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
12 Sobic.002G067050 - -
13 Sobic.004G325150 - -
14 Sobic.002G237600 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
15 Sobic.006G137900 heavy metal-associated domain containing protein, expressed -
16 Sobic.002G085700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
17 Sobic.004G090900 nuclear ribonuclease Z, putative, expressed K00784: ribonuclease Z
18 Sobic.001G045300 ubiquitin family protein, putative, expressed -
19 Sobic.002G046500 gibberellin 20 oxidase 1-B, putative, expressed -
20 Sobic.008G069901 - -


Gene co-expression network
sample Sobic007G193500 Sobic007G193500 Sobic008G045232 Sobic008G045232 Sobic007G193500--Sobic008G045232 Sobic005G085800 Sobic005G085800 Sobic007G193500--Sobic005G085800 Sobic002G289701 Sobic002G289701 Sobic007G193500--Sobic002G289701 Sobic008G053000 Sobic008G053000 Sobic007G193500--Sobic008G053000 Sobic005G030200 Sobic005G030200 Sobic007G193500--Sobic005G030200 Sobic001G152500 Sobic001G152500 Sobic007G193500--Sobic001G152500 Sobic001G189800 Sobic001G189800 Sobic007G193500--Sobic001G189800 Sobic007G007650 Sobic007G007650 Sobic007G193500--Sobic007G007650 Sobic001G482500 Sobic001G482500 Sobic007G193500--Sobic001G482500 Sobic008G045232--Sobic002G289701 Sobic008G045232--Sobic005G030200 Sobic002G191300 Sobic002G191300 Sobic008G045232--Sobic002G191300 Sobic008G045232--Sobic001G189800 Sobic008G045232--Sobic005G085800 Sobic008G045100 Sobic008G045100 Sobic008G045232--Sobic008G045100 Sobic001G234700 Sobic001G234700 Sobic008G045232--Sobic001G234700 Sobic005G085800--Sobic002G289701 Sobic002G067050 Sobic002G067050 Sobic005G085800--Sobic002G067050 Sobic001G001000 Sobic001G001000 Sobic005G085800--Sobic001G001000 Sobic005G085800--Sobic008G045232 Sobic005G085800--Sobic005G030200 Sobic005G085800--Sobic002G191300 Sobic001G033701 Sobic001G033701 Sobic005G085800--Sobic001G033701 Sobic003G210701 Sobic003G210701 Sobic005G085800--Sobic003G210701 Sobic004G325150 Sobic004G325150 Sobic005G085800--Sobic004G325150 Sobic002G289701--Sobic008G045232 Sobic002G289701--Sobic002G191300 Sobic002G289701--Sobic005G030200 Sobic002G289701--Sobic001G189800 Sobic003G190701 Sobic003G190701 Sobic002G289701--Sobic003G190701 Sobic009G125700 Sobic009G125700 Sobic002G289701--Sobic009G125700 Sobic002G289701--Sobic008G045100 Sobic002G289701--Sobic001G234700 Sobic003G021401 Sobic003G021401 Sobic008G053000--Sobic003G021401 Sobic002G277366 Sobic002G277366 Sobic008G053000--Sobic002G277366 Sobic002G237600 Sobic002G237600 Sobic008G053000--Sobic002G237600 Sobic001G452300 Sobic001G452300 Sobic008G053000--Sobic001G452300 Sobic003G023100 Sobic003G023100 Sobic008G053000--Sobic003G023100 Sobic003G120050 Sobic003G120050 Sobic008G053000--Sobic003G120050 Sobic002G063201 Sobic002G063201 Sobic008G053000--Sobic002G063201 Sobic008G008601 Sobic008G008601 Sobic008G053000--Sobic008G008601 Sobic007G087500 Sobic007G087500 Sobic008G053000--Sobic007G087500 Sobic005G030200--Sobic002G191300 Sobic003G083100 Sobic003G083100 Sobic005G030200--Sobic003G083100 Sobic005G030200--Sobic002G289701 Sobic001G406600 Sobic001G406600 Sobic005G030200--Sobic001G406600 Sobic005G120433 Sobic005G120433 Sobic005G030200--Sobic005G120433 Sobic005G030200--Sobic008G045100 Sobic005G030200--Sobic001G234700 Sobic001G152500--Sobic008G045232 Sobic002G267050 Sobic002G267050 Sobic001G152500--Sobic002G267050 Sobic001G152500--Sobic002G289701 Sobic001G152500--Sobic005G030200 Sobic001G152500--Sobic002G191300 Sobic001G152500--Sobic001G189800 Sobic001G152500--Sobic008G053000 Sobic005G201800 Sobic005G201800 Sobic001G152500--Sobic005G201800 Sobic010G212600 Sobic010G212600 Sobic001G152500--Sobic010G212600 Sobic001G189800--Sobic002G191300 Sobic001G189800--Sobic005G030200 Sobic001G189800--Sobic002G289701 Sobic001G189800--Sobic001G234700 Sobic004G052700 Sobic004G052700 Sobic007G007650--Sobic004G052700 Sobic008G096401 Sobic008G096401 Sobic007G007650--Sobic008G096401 Sobic007G120600 Sobic007G120600 Sobic007G007650--Sobic007G120600 Sobic001G060001 Sobic001G060001 Sobic007G007650--Sobic001G060001 Sobic004G181100 Sobic004G181100 Sobic007G007650--Sobic004G181100 Sobic006G042800 Sobic006G042800 Sobic007G007650--Sobic006G042800 Sobic010G146350 Sobic010G146350 Sobic007G007650--Sobic010G146350 Sobic010G267651 Sobic010G267651 Sobic007G007650--Sobic010G267651 Sobic002G188800 Sobic002G188800 Sobic007G007650--Sobic002G188800 Sobic004G173800 Sobic004G173800 Sobic001G482500--Sobic004G173800 Sobic001G152240 Sobic001G152240 Sobic001G482500--Sobic001G152240 Sobic008G053700 Sobic008G053700 Sobic001G482500--Sobic008G053700 Sobic006G004700 Sobic006G004700 Sobic001G482500--Sobic006G004700 Sobic002G103400 Sobic002G103400 Sobic001G482500--Sobic002G103400 Sobic006G076700 Sobic006G076700 Sobic001G482500--Sobic006G076700 Sobic003G046000 Sobic003G046000 Sobic001G482500--Sobic003G046000 Sobic004G184900 Sobic004G184900 Sobic001G482500--Sobic004G184900 Sobic005G144101 Sobic005G144101 Sobic001G482500--Sobic005G144101
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.