Gene annotation
Transcriptome id Sobic.008G001500.1
Synonym Sb08g000320
Functional annotation signal recognition particle receptor subunit beta, putative, expressed
UniProt C5YPQ6
Pfam PF00025
Panther DB PTHR11485
NCBI CDD KOG0090; Signal recognition particle receptor, beta subunit (small G protein superfamily)
KEGG Orthology K12272; SRPRB, signal recognition particle receptor subunit beta
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G05670 : signal recognition particle binding
RAP-DB (Rice) LOC_Os08g41250.2 : signal recognition particle receptor subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a006030 , Zm00025a030986
Brachypodium KQK11611
Barley HORVU7Hr1G039510.4 , HORVU7Hr1G039510.7 , HORVU7Hr1G039510.6 , HORVU7Hr1G039510.5 , HORVU7Hr1G039510.3 , HORVU7Hr1G039510.2 , HORVU7Hr1G039510.1 , HORVU7Hr1G039510.9
Wheat TraesCS7A02G193200 , TraesCS7D02G194500 , TraesCS7D02G194500 , TraesCS7B02G098500
Populus -


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cDNA sequences
Sobic.008G001500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G001600 - -
2 Sobic.006G108766 - -
3 Sobic.001G198300 GRF zinc finger family protein, expressed -
4 Sobic.003G406120 - -
5 Sobic.006G257550 - -
6 Sobic.006G238900 - -
7 Sobic.001G079000 - -
8 Sobic.004G037401 - -
9 Sobic.002G308800 expressed protein -
10 Sobic.010G058600 expressed protein -
11 Sobic.005G230900 GRAS family transcription factor domain containing protein, expressed -
12 Sobic.004G207350 - -
13 Sobic.001G523050 - -
14 Sobic.002G365300 NBS-LRR type disease resistance protein, putative, expressed -
15 Sobic.003G193900 - -
16 Sobic.009G022600 - -
17 Sobic.001G421450 - -
18 Sobic.003G124400 - -
19 Sobic.006G148600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR18 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
20 Sobic.003G149700 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase


Gene co-expression network
sample Sobic008G001500 Sobic008G001500 Sobic008G001600 Sobic008G001600 Sobic008G001500--Sobic008G001600 Sobic006G108766 Sobic006G108766 Sobic008G001500--Sobic006G108766 Sobic001G198300 Sobic001G198300 Sobic008G001500--Sobic001G198300 Sobic003G406120 Sobic003G406120 Sobic008G001500--Sobic003G406120 Sobic006G257550 Sobic006G257550 Sobic008G001500--Sobic006G257550 Sobic006G238900 Sobic006G238900 Sobic008G001500--Sobic006G238900 Sobic001G079000 Sobic001G079000 Sobic008G001500--Sobic001G079000 Sobic004G037401 Sobic004G037401 Sobic008G001500--Sobic004G037401 Sobic002G308800 Sobic002G308800 Sobic008G001500--Sobic002G308800 Sobic008G001600--Sobic006G257550 Sobic008G001600--Sobic003G406120 Sobic002G235000 Sobic002G235000 Sobic008G001600--Sobic002G235000 Sobic008G001600--Sobic008G001500 Sobic010G028366 Sobic010G028366 Sobic008G001600--Sobic010G028366 Sobic008G001600--Sobic006G108766 Sobic001G472900 Sobic001G472900 Sobic008G001600--Sobic001G472900 Sobic001G523050 Sobic001G523050 Sobic008G001600--Sobic001G523050 Sobic003G076300 Sobic003G076300 Sobic008G001600--Sobic003G076300 Sobic006G108766--Sobic006G238900 Sobic006G108766--Sobic003G406120 Sobic006G108766--Sobic008G001600 Sobic006G108766--Sobic008G001500 Sobic007G155950 Sobic007G155950 Sobic006G108766--Sobic007G155950 Sobic005G230900 Sobic005G230900 Sobic006G108766--Sobic005G230900 Sobic006G108766--Sobic004G037401 Sobic003G040300 Sobic003G040300 Sobic006G108766--Sobic003G040300 Sobic004G207350 Sobic004G207350 Sobic006G108766--Sobic004G207350 Sobic001G198300--Sobic008G001500 Sobic001G198300--Sobic001G523050 Sobic001G198300--Sobic006G108766 Sobic002G365300 Sobic002G365300 Sobic001G198300--Sobic002G365300 Sobic003G193900 Sobic003G193900 Sobic001G198300--Sobic003G193900 Sobic003G059500 Sobic003G059500 Sobic001G198300--Sobic003G059500 Sobic001G198300--Sobic006G238900 Sobic001G198300--Sobic008G001600 Sobic001G181400 Sobic001G181400 Sobic001G198300--Sobic001G181400 Sobic003G406120--Sobic005G230900 Sobic003G406120--Sobic006G108766 Sobic003G406120--Sobic008G001600 Sobic003G406120--Sobic004G207350 Sobic003G406120--Sobic006G238900 Sobic001G084133 Sobic001G084133 Sobic003G406120--Sobic001G084133 Sobic003G406120--Sobic002G365300 Sobic003G406120--Sobic004G037401 Sobic004G089801 Sobic004G089801 Sobic003G406120--Sobic004G089801 Sobic006G257550--Sobic008G001600 Sobic006G257550--Sobic002G235000 Sobic006G128233 Sobic006G128233 Sobic006G257550--Sobic006G128233 Sobic006G257550--Sobic010G028366 Sobic003G123950 Sobic003G123950 Sobic006G257550--Sobic003G123950 Sobic007G163200 Sobic007G163200 Sobic006G257550--Sobic007G163200 Sobic001G499400 Sobic001G499400 Sobic006G257550--Sobic001G499400 Sobic001G222100 Sobic001G222100 Sobic006G257550--Sobic001G222100 Sobic001G258700 Sobic001G258700 Sobic006G257550--Sobic001G258700 Sobic006G238900--Sobic006G108766 Sobic006G238900--Sobic003G406120 Sobic006G238900--Sobic005G230900 Sobic006G238900--Sobic003G040300 Sobic006G238900--Sobic001G084133 Sobic001G090700 Sobic001G090700 Sobic006G238900--Sobic001G090700 Sobic006G238900--Sobic001G079000 Sobic006G248450 Sobic006G248450 Sobic006G238900--Sobic006G248450 Sobic001G454600 Sobic001G454600 Sobic006G238900--Sobic001G454600 Sobic003G124400 Sobic003G124400 Sobic001G079000--Sobic003G124400 Sobic001G239000 Sobic001G239000 Sobic001G079000--Sobic001G239000 Sobic009G026600 Sobic009G026600 Sobic001G079000--Sobic009G026600 Sobic005G150501 Sobic005G150501 Sobic001G079000--Sobic005G150501 Sobic003G375500 Sobic003G375500 Sobic001G079000--Sobic003G375500 Sobic005G027350 Sobic005G027350 Sobic001G079000--Sobic005G027350 Sobic008G037300 Sobic008G037300 Sobic001G079000--Sobic008G037300 Sobic003G401700 Sobic003G401700 Sobic001G079000--Sobic003G401700 Sobic005G068000 Sobic005G068000 Sobic001G079000--Sobic005G068000 Sobic009G022600 Sobic009G022600 Sobic004G037401--Sobic009G022600 Sobic003G149700 Sobic003G149700 Sobic004G037401--Sobic003G149700 Sobic005G150250 Sobic005G150250 Sobic004G037401--Sobic005G150250 Sobic006G155400 Sobic006G155400 Sobic004G037401--Sobic006G155400 Sobic002G132201 Sobic002G132201 Sobic004G037401--Sobic002G132201 Sobic005G073300 Sobic005G073300 Sobic004G037401--Sobic005G073300 Sobic002G054800 Sobic002G054800 Sobic004G037401--Sobic002G054800 Sobic004G037401--Sobic004G207350 Sobic003G356500 Sobic003G356500 Sobic004G037401--Sobic003G356500 Sobic002G308800--Sobic001G079000 Sobic002G308800--Sobic008G001500 Sobic006G148600 Sobic006G148600 Sobic002G308800--Sobic006G148600 Sobic002G308800--Sobic003G406120 Sobic002G308800--Sobic003G124400 Sobic002G308800--Sobic006G108766 Sobic002G308800--Sobic004G207350 Sobic002G308800--Sobic003G375500 Sobic002G308800--Sobic008G001600
Octagon: transcription factors


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