Gene annotation
Transcriptome id Sobic.008G088300.6,Sobic.008G088300.1,Sobic.008G088300.4,Sobic.008G088300.3,Sobic.008G088300.2,Sobic.008G088300.5
Synonym Sb08g009600
Functional annotation OsFBDUF58 - F-box and DUF domain containing protein, expressed
UniProt A0A1B6PCI7 , A0A109NDV2 , A0A1Z5R5K8 , C6JSB3 , A0A1Z5R6D1 , A0A1W0VQT0 , C5YU60
Pfam PF03478
Panther DB PTHR11102 PTHR11102:SF101
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G22180 : F-box family protein with a domain of unknown function (DUF295)
RAP-DB (Rice) LOC_Os11g38140.1 : OsFBDUF58 - F-box and DUF domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.008G088300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
2 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
3 Sobic.002G051750 - -
4 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
5 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
6 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
7 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
8 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
9 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
10 Sobic.010G116600 FHA domain containing protein, putative, expressed -
11 Sobic.007G132100 myrosinase precursor, putative, expressed -
12 Sobic.010G275500 EF hand family protein, putative, expressed -
13 Sobic.006G131000 expressed protein K11968: ariadne-1
14 Sobic.001G261492 - -
15 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
16 Sobic.006G281700 DUF803 domain containing, putative, expressed -
17 Sobic.002G154000 EDM2, putative, expressed -
18 Sobic.010G118950 - -
19 Sobic.001G014300 OsFBDUF15 - F-box and DUF domain containing protein, expressed -
20 Sobic.003G416700 homeobox domain containing protein, expressed -


Gene co-expression network
sample Sobic008G088300 Sobic008G088300 Sobic004G072100 Sobic004G072100 Sobic008G088300--Sobic004G072100 Sobic006G240100 Sobic006G240100 Sobic008G088300--Sobic006G240100 Sobic002G051750 Sobic002G051750 Sobic008G088300--Sobic002G051750 Sobic002G299700 Sobic002G299700 Sobic008G088300--Sobic002G299700 Sobic003G404500 Sobic003G404500 Sobic008G088300--Sobic003G404500 Sobic009G044800 Sobic009G044800 Sobic008G088300--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic008G088300--Sobic007G218000 Sobic001G155000 Sobic001G155000 Sobic008G088300--Sobic001G155000 Sobic006G163800 Sobic006G163800 Sobic008G088300--Sobic006G163800 Sobic004G072100--Sobic007G218000 Sobic010G053800 Sobic010G053800 Sobic004G072100--Sobic010G053800 Sobic010G275500 Sobic010G275500 Sobic004G072100--Sobic010G275500 Sobic007G132100 Sobic007G132100 Sobic004G072100--Sobic007G132100 Sobic006G012500 Sobic006G012500 Sobic004G072100--Sobic006G012500 Sobic010G069100 Sobic010G069100 Sobic004G072100--Sobic010G069100 Sobic010G116600 Sobic010G116600 Sobic004G072100--Sobic010G116600 Sobic008G047800 Sobic008G047800 Sobic004G072100--Sobic008G047800 Sobic004G072100--Sobic001G155000 Sobic006G240100--Sobic009G044800 Sobic003G416700 Sobic003G416700 Sobic006G240100--Sobic003G416700 Sobic002G154000 Sobic002G154000 Sobic006G240100--Sobic002G154000 Sobic006G240100--Sobic007G132100 Sobic006G240100--Sobic007G218000 Sobic003G360400 Sobic003G360400 Sobic006G240100--Sobic003G360400 Sobic010G204400 Sobic010G204400 Sobic006G240100--Sobic010G204400 Sobic001G354600 Sobic001G354600 Sobic006G240100--Sobic001G354600 Sobic006G240100--Sobic004G072100 Sobic002G051750--Sobic008G088300 Sobic001G014300 Sobic001G014300 Sobic002G051750--Sobic001G014300 Sobic003G312700 Sobic003G312700 Sobic002G051750--Sobic003G312700 Sobic004G355800 Sobic004G355800 Sobic002G051750--Sobic004G355800 Sobic001G461400 Sobic001G461400 Sobic002G051750--Sobic001G461400 Sobic002G051750--Sobic006G240100 Sobic006G067600 Sobic006G067600 Sobic002G051750--Sobic006G067600 Sobic002G357100 Sobic002G357100 Sobic002G051750--Sobic002G357100 Sobic001G087600 Sobic001G087600 Sobic002G051750--Sobic001G087600 Sobic002G299700--Sobic010G116600 Sobic001G363500 Sobic001G363500 Sobic002G299700--Sobic001G363500 Sobic005G112300 Sobic005G112300 Sobic002G299700--Sobic005G112300 Sobic002G397500 Sobic002G397500 Sobic002G299700--Sobic002G397500 Sobic004G048800 Sobic004G048800 Sobic002G299700--Sobic004G048800 Sobic004G242400 Sobic004G242400 Sobic002G299700--Sobic004G242400 Sobic007G105100 Sobic007G105100 Sobic002G299700--Sobic007G105100 Sobic003G408600 Sobic003G408600 Sobic002G299700--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G299700--Sobic007G062800 Sobic001G451400 Sobic001G451400 Sobic003G404500--Sobic001G451400 Sobic001G441400 Sobic001G441400 Sobic003G404500--Sobic001G441400 Sobic009G245800 Sobic009G245800 Sobic003G404500--Sobic009G245800 Sobic003G404500--Sobic001G363500 Sobic003G404500--Sobic010G116600 Sobic003G404500--Sobic007G218000 Sobic003G404500--Sobic004G072100 Sobic003G404500--Sobic009G044800 Sobic003G404500--Sobic010G053800 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic009G044800--Sobic010G116600 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic007G218000--Sobic007G132100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic007G218000--Sobic009G044800 Sobic007G218000--Sobic010G204400 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic001G155000--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G155000--Sobic002G006900 Sobic003G200200 Sobic003G200200 Sobic001G155000--Sobic003G200200 Sobic009G040600 Sobic009G040600 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000 Sobic006G163800--Sobic010G204400 Sobic001G369000 Sobic001G369000 Sobic006G163800--Sobic001G369000 Sobic006G163800--Sobic006G131000 Sobic006G163800--Sobic010G053800 Sobic006G163800--Sobic007G218000 Sobic006G163800--Sobic010G275500 Sobic006G163800--Sobic006G012500 Sobic004G039600 Sobic004G039600 Sobic006G163800--Sobic004G039600 Sobic004G146500 Sobic004G146500 Sobic006G163800--Sobic004G146500
Octagon: transcription factors


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