Gene annotation
Transcriptome id Sobic.008G113400.1
Synonym Sb08g016730
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1Z5R637
Pfam -
Panther DB PTHR33115 PTHR33115:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G18980 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os12g34360.1 : expressed protein
MaizeGDB (Corn) Zm00025a000614 , Zm00025a002576 , Zm00025a025554 , Zm00025a002577
Brachypodium KQJ86529 , KQK21594
Barley HORVU5Hr1G027110.2 , HORVU5Hr1G027110.1
Wheat TraesCS5B02G104700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G173400 DUF623 domain containing protein, expressed -
2 Sobic.001G298100 Not investigated(PubMedID : 23766026)@Osmolyte biosynthesis(PubMedID : 28620409)@AP2 domain containing protein, expressed -
3 Sobic.001G354900 - -
4 Sobic.004G063750 - -
5 Sobic.009G211500 - -
6 Sobic.001G431200 glyoxal oxidase-related, putative, expressed -
7 Sobic.002G295000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ZOS9-18 - C2H2 zinc finger protein, expressed -
8 Sobic.001G213200 ZOS10-05 - C2H2 zinc finger protein, expressed -
9 Sobic.003G393001 - -
10 Sobic.006G264100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
11 Sobic.002G187350 - -
12 Sobic.002G268200 glycosyl hydrolase family 29, putative, expressed K01206: alpha-L-fucosidase
13 Sobic.004G221150 - -
14 Sobic.010G081600 cytokinin-O-glucosyltransferase 3, putative, expressed -
15 Sobic.009G053201 - -
16 Sobic.002G202200 - -
17 Sobic.007G038900 expressed protein -
18 Sobic.004G190300 expressed protein -
19 Sobic.002G241000 expressed protein -
20 Sobic.001G391000 aspartic proteinase nepenthesin precursor, putative, expressed -


Gene co-expression network
sample Sobic008G113400 Sobic008G113400 Sobic009G173400 Sobic009G173400 Sobic008G113400--Sobic009G173400 Sobic001G298100 Sobic001G298100 Sobic008G113400--Sobic001G298100 Sobic001G354900 Sobic001G354900 Sobic008G113400--Sobic001G354900 Sobic004G063750 Sobic004G063750 Sobic008G113400--Sobic004G063750 Sobic009G211500 Sobic009G211500 Sobic008G113400--Sobic009G211500 Sobic001G431200 Sobic001G431200 Sobic008G113400--Sobic001G431200 Sobic002G295000 Sobic002G295000 Sobic008G113400--Sobic002G295000 Sobic001G213200 Sobic001G213200 Sobic008G113400--Sobic001G213200 Sobic003G393001 Sobic003G393001 Sobic008G113400--Sobic003G393001 Sobic009G173400--Sobic008G113400 Sobic009G173400--Sobic009G211500 Sobic009G173400--Sobic001G298100 Sobic007G156400 Sobic007G156400 Sobic009G173400--Sobic007G156400 Sobic007G072700 Sobic007G072700 Sobic009G173400--Sobic007G072700 Sobic004G282200 Sobic004G282200 Sobic009G173400--Sobic004G282200 Sobic004G264800 Sobic004G264800 Sobic009G173400--Sobic004G264800 Sobic007G064400 Sobic007G064400 Sobic009G173400--Sobic007G064400 Sobic006G264100 Sobic006G264100 Sobic009G173400--Sobic006G264100 Sobic001G298100--Sobic008G113400 Sobic001G298100--Sobic001G354900 Sobic005G181100 Sobic005G181100 Sobic001G298100--Sobic005G181100 Sobic002G241000 Sobic002G241000 Sobic001G298100--Sobic002G241000 Sobic002G268200 Sobic002G268200 Sobic001G298100--Sobic002G268200 Sobic001G084300 Sobic001G084300 Sobic001G298100--Sobic001G084300 Sobic001G298100--Sobic009G173400 Sobic001G536300 Sobic001G536300 Sobic001G298100--Sobic001G536300 Sobic009G053201 Sobic009G053201 Sobic001G298100--Sobic009G053201 Sobic001G354900--Sobic001G213200 Sobic001G075900 Sobic001G075900 Sobic001G354900--Sobic001G075900 Sobic003G073620 Sobic003G073620 Sobic001G354900--Sobic003G073620 Sobic001G354900--Sobic001G536300 Sobic001G354900--Sobic002G268200 Sobic001G523500 Sobic001G523500 Sobic001G354900--Sobic001G523500 Sobic001G354900--Sobic001G084300 Sobic002G202200 Sobic002G202200 Sobic001G354900--Sobic002G202200 Sobic004G221150 Sobic004G221150 Sobic001G354900--Sobic004G221150 Sobic001G399501 Sobic001G399501 Sobic004G063750--Sobic001G399501 Sobic008G144100 Sobic008G144100 Sobic004G063750--Sobic008G144100 Sobic004G206900 Sobic004G206900 Sobic004G063750--Sobic004G206900 Sobic009G187500 Sobic009G187500 Sobic004G063750--Sobic009G187500 Sobic002G173600 Sobic002G173600 Sobic004G063750--Sobic002G173600 Sobic004G089700 Sobic004G089700 Sobic004G063750--Sobic004G089700 Sobic002G339250 Sobic002G339250 Sobic004G063750--Sobic002G339250 Sobic004G063750--Sobic001G431200 Sobic008G002100 Sobic008G002100 Sobic004G063750--Sobic008G002100 Sobic006G270300 Sobic006G270300 Sobic009G211500--Sobic006G270300 Sobic006G161200 Sobic006G161200 Sobic009G211500--Sobic006G161200 Sobic003G337900 Sobic003G337900 Sobic009G211500--Sobic003G337900 Sobic006G111400 Sobic006G111400 Sobic009G211500--Sobic006G111400 Sobic005G205100 Sobic005G205100 Sobic009G211500--Sobic005G205100 Sobic008G007100 Sobic008G007100 Sobic009G211500--Sobic008G007100 Sobic010G215201 Sobic010G215201 Sobic009G211500--Sobic010G215201 Sobic004G190300 Sobic004G190300 Sobic009G211500--Sobic004G190300 Sobic003G150700 Sobic003G150700 Sobic009G211500--Sobic003G150700 Sobic001G431200--Sobic001G399501 Sobic001G431200--Sobic004G063750 Sobic001G431200--Sobic004G221150 Sobic001G431200--Sobic008G144100 Sobic001G431200--Sobic004G089700 Sobic009G203400 Sobic009G203400 Sobic001G431200--Sobic009G203400 Sobic006G273500 Sobic006G273500 Sobic001G431200--Sobic006G273500 Sobic001G431200--Sobic002G173600 Sobic001G431200--Sobic002G339250 Sobic002G295000--Sobic004G063750 Sobic002G295000--Sobic008G113400 Sobic002G295000--Sobic002G241000 Sobic002G187350 Sobic002G187350 Sobic002G295000--Sobic002G187350 Sobic002G295000--Sobic009G173400 Sobic002G038400 Sobic002G038400 Sobic002G295000--Sobic002G038400 Sobic002G295000--Sobic001G431200 Sobic002G295000--Sobic001G399501 Sobic002G295000--Sobic006G264100 Sobic001G213200--Sobic003G073620 Sobic001G213200--Sobic001G075900 Sobic001G213200--Sobic001G354900 Sobic001G213200--Sobic002G202200 Sobic001G391000 Sobic001G391000 Sobic001G213200--Sobic001G391000 Sobic009G242032 Sobic009G242032 Sobic001G213200--Sobic009G242032 Sobic005G066800 Sobic005G066800 Sobic001G213200--Sobic005G066800 Sobic001G213200--Sobic004G221150 Sobic003G265300 Sobic003G265300 Sobic001G213200--Sobic003G265300 Sobic003G393001--Sobic001G213200 Sobic003G393001--Sobic009G211500 Sobic003G393001--Sobic008G113400 Sobic003G393001--Sobic001G354900 Sobic006G210600 Sobic006G210600 Sobic003G393001--Sobic006G210600 Sobic003G393001--Sobic010G215201 Sobic002G152400 Sobic002G152400 Sobic003G393001--Sobic002G152400 Sobic003G393001--Sobic004G190300 Sobic005G150250 Sobic005G150250 Sobic003G393001--Sobic005G150250
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.