Gene annotation
Transcriptome id Sobic.006G264100.1,Sobic.006G264100.2
Synonym Sb06g032680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt A0A1B6PP34 , A0A1Z5RFK9
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19850 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os04g57800.1 : BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a009332
Brachypodium -
Barley HORVU2Hr1G120200.8 , HORVU2Hr1G120200.7 , HORVU2Hr1G120200.5 , HORVU2Hr1G120200.4 , HORVU2Hr1G120200.3 , HORVU2Hr1G120200.1 , HORVU2Hr1G120200.6
Wheat TraesCS2D02G555200 , TraesCS2B02G585400 , TraesCS6B02G237800 , TraesCS3B02G085000 , TraesCS3A02G071400 , TraesCS2A02G553600
Populus -


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cDNA sequences
Sobic.006G264100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G414200 expressed protein -
2 Sobic.008G113400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.004G063750 - -
4 Sobic.009G173400 DUF623 domain containing protein, expressed -
5 Sobic.002G187350 - -
6 Sobic.002G038400 expressed protein -
7 Sobic.002G295000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ZOS9-18 - C2H2 zinc finger protein, expressed -
8 Sobic.002G241000 expressed protein -
9 Sobic.002G282100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
10 Sobic.004G156600 - -
11 Sobic.003G148500 endoglucanase, putative, expressed -
12 Sobic.001G431200 glyoxal oxidase-related, putative, expressed -
13 Sobic.006G245200 OsFBX239 - F-box domain containing protein, expressed -
14 Sobic.004G221150 - -
15 Sobic.001G531900 cyclin-like F-box, putative, expressed -
16 Sobic.002G268200 glycosyl hydrolase family 29, putative, expressed K01206: alpha-L-fucosidase
17 Sobic.005G021200 expressed protein -
18 Sobic.001G298100 Not investigated(PubMedID : 23766026)@Osmolyte biosynthesis(PubMedID : 28620409)@AP2 domain containing protein, expressed -
19 Sobic.006G163650 - -
20 Sobic.001G399501 - -


Gene co-expression network
sample Sobic006G264100 Sobic006G264100 Sobic001G414200 Sobic001G414200 Sobic006G264100--Sobic001G414200 Sobic008G113400 Sobic008G113400 Sobic006G264100--Sobic008G113400 Sobic004G063750 Sobic004G063750 Sobic006G264100--Sobic004G063750 Sobic009G173400 Sobic009G173400 Sobic006G264100--Sobic009G173400 Sobic002G187350 Sobic002G187350 Sobic006G264100--Sobic002G187350 Sobic002G038400 Sobic002G038400 Sobic006G264100--Sobic002G038400 Sobic002G295000 Sobic002G295000 Sobic006G264100--Sobic002G295000 Sobic002G241000 Sobic002G241000 Sobic006G264100--Sobic002G241000 Sobic002G282100 Sobic002G282100 Sobic006G264100--Sobic002G282100 Sobic007G153300 Sobic007G153300 Sobic001G414200--Sobic007G153300 Sobic006G163650 Sobic006G163650 Sobic001G414200--Sobic006G163650 Sobic003G006500 Sobic003G006500 Sobic001G414200--Sobic003G006500 Sobic003G359200 Sobic003G359200 Sobic001G414200--Sobic003G359200 Sobic004G156600 Sobic004G156600 Sobic001G414200--Sobic004G156600 Sobic009G163700 Sobic009G163700 Sobic001G414200--Sobic009G163700 Sobic003G406500 Sobic003G406500 Sobic001G414200--Sobic003G406500 Sobic004G128800 Sobic004G128800 Sobic001G414200--Sobic004G128800 Sobic005G168500 Sobic005G168500 Sobic001G414200--Sobic005G168500 Sobic008G113400--Sobic009G173400 Sobic001G298100 Sobic001G298100 Sobic008G113400--Sobic001G298100 Sobic001G354900 Sobic001G354900 Sobic008G113400--Sobic001G354900 Sobic008G113400--Sobic004G063750 Sobic009G211500 Sobic009G211500 Sobic008G113400--Sobic009G211500 Sobic001G431200 Sobic001G431200 Sobic008G113400--Sobic001G431200 Sobic008G113400--Sobic002G295000 Sobic001G213200 Sobic001G213200 Sobic008G113400--Sobic001G213200 Sobic003G393001 Sobic003G393001 Sobic008G113400--Sobic003G393001 Sobic001G399501 Sobic001G399501 Sobic004G063750--Sobic001G399501 Sobic008G144100 Sobic008G144100 Sobic004G063750--Sobic008G144100 Sobic004G206900 Sobic004G206900 Sobic004G063750--Sobic004G206900 Sobic009G187500 Sobic009G187500 Sobic004G063750--Sobic009G187500 Sobic002G173600 Sobic002G173600 Sobic004G063750--Sobic002G173600 Sobic004G089700 Sobic004G089700 Sobic004G063750--Sobic004G089700 Sobic002G339250 Sobic002G339250 Sobic004G063750--Sobic002G339250 Sobic004G063750--Sobic001G431200 Sobic008G002100 Sobic008G002100 Sobic004G063750--Sobic008G002100 Sobic009G173400--Sobic008G113400 Sobic009G173400--Sobic009G211500 Sobic009G173400--Sobic001G298100 Sobic007G156400 Sobic007G156400 Sobic009G173400--Sobic007G156400 Sobic007G072700 Sobic007G072700 Sobic009G173400--Sobic007G072700 Sobic004G282200 Sobic004G282200 Sobic009G173400--Sobic004G282200 Sobic004G264800 Sobic004G264800 Sobic009G173400--Sobic004G264800 Sobic007G064400 Sobic007G064400 Sobic009G173400--Sobic007G064400 Sobic009G173400--Sobic006G264100 Sobic002G202200 Sobic002G202200 Sobic002G187350--Sobic002G202200 Sobic003G259000 Sobic003G259000 Sobic002G187350--Sobic003G259000 Sobic003G005332 Sobic003G005332 Sobic002G187350--Sobic003G005332 Sobic010G113800 Sobic010G113800 Sobic002G187350--Sobic010G113800 Sobic001G391000 Sobic001G391000 Sobic002G187350--Sobic001G391000 Sobic008G007100 Sobic008G007100 Sobic002G187350--Sobic008G007100 Sobic008G134000 Sobic008G134000 Sobic002G187350--Sobic008G134000 Sobic009G242032 Sobic009G242032 Sobic002G187350--Sobic009G242032 Sobic005G066800 Sobic005G066800 Sobic002G187350--Sobic005G066800 Sobic007G076800 Sobic007G076800 Sobic002G038400--Sobic007G076800 Sobic002G366700 Sobic002G366700 Sobic002G038400--Sobic002G366700 Sobic002G339400 Sobic002G339400 Sobic002G038400--Sobic002G339400 Sobic010G087200 Sobic010G087200 Sobic002G038400--Sobic010G087200 Sobic001G494150 Sobic001G494150 Sobic002G038400--Sobic001G494150 Sobic002G038400--Sobic002G282100 Sobic007G206700 Sobic007G206700 Sobic002G038400--Sobic007G206700 Sobic001G428700 Sobic001G428700 Sobic002G038400--Sobic001G428700 Sobic006G186200 Sobic006G186200 Sobic002G038400--Sobic006G186200 Sobic002G295000--Sobic004G063750 Sobic002G295000--Sobic008G113400 Sobic002G295000--Sobic002G241000 Sobic002G295000--Sobic002G187350 Sobic002G295000--Sobic009G173400 Sobic002G295000--Sobic002G038400 Sobic002G295000--Sobic001G431200 Sobic002G295000--Sobic001G399501 Sobic002G295000--Sobic006G264100 Sobic001G227100 Sobic001G227100 Sobic002G241000--Sobic001G227100 Sobic002G241000--Sobic004G063750 Sobic006G082700 Sobic006G082700 Sobic002G241000--Sobic006G082700 Sobic007G135900 Sobic007G135900 Sobic002G241000--Sobic007G135900 Sobic002G059600 Sobic002G059600 Sobic002G241000--Sobic002G059600 Sobic003G438200 Sobic003G438200 Sobic002G241000--Sobic003G438200 Sobic002G241000--Sobic001G298100 Sobic002G241000--Sobic002G295000 Sobic010G212000 Sobic010G212000 Sobic002G241000--Sobic010G212000 Sobic009G190400 Sobic009G190400 Sobic002G282100--Sobic009G190400 Sobic003G040100 Sobic003G040100 Sobic002G282100--Sobic003G040100 Sobic004G061600 Sobic004G061600 Sobic002G282100--Sobic004G061600 Sobic001G062700 Sobic001G062700 Sobic002G282100--Sobic001G062700 Sobic002G282100--Sobic004G156600 Sobic006G155900 Sobic006G155900 Sobic002G282100--Sobic006G155900 Sobic002G282100--Sobic005G168500 Sobic002G282100--Sobic007G076800 Sobic003G390300 Sobic003G390300 Sobic002G282100--Sobic003G390300
Octagon: transcription factors


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