Gene annotation
Transcriptome id Sobic.001G298100.1
Synonym ethylene response factor 6, SbERF6;SbDHN, Sb01g029065
Functional annotation Not investigated (PubMedID : 23766026)
Osmolyte biosynthesis (PubMedID : 28620409)
AP2 domain containing protein, expressed
UniProt A0A1B6QLY8
Pfam PF00847
Panther DB PTHR31985 PTHR31985:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G44940 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os10g41130.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020882 , Zm00025a051074 , Zm00025a003312 , Zm00025a020881 , Zm00025a051964
Brachypodium KQJ97798
Barley HORVU1Hr1G056090.1
Wheat TraesCS5B02G310900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G113400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G354900 - -
3 Sobic.005G181100 expressed protein -
4 Sobic.002G241000 expressed protein -
5 Sobic.002G268200 glycosyl hydrolase family 29, putative, expressed K01206: alpha-L-fucosidase
6 Sobic.001G084300 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
7 Sobic.009G173400 DUF623 domain containing protein, expressed -
8 Sobic.001G536300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KIP1, putative, expressed -
9 Sobic.009G053201 - -
10 Sobic.004G063750 - -
11 Sobic.001G213200 ZOS10-05 - C2H2 zinc finger protein, expressed -
12 Sobic.004G300500 Trihelix Family(PubMedID : 24864043)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.006G053000 heavy metal-associated domain containing protein, expressed -
14 Sobic.009G242032 - -
15 Sobic.004G236500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
16 Sobic.005G126401 - -
17 Sobic.006G154900 mitochondrial carrier protein, putative, expressed -
18 Sobic.003G230300 expressed protein -
19 Sobic.001G227100 zinc finger family protein, putative, expressed -
20 Sobic.010G081600 cytokinin-O-glucosyltransferase 3, putative, expressed -


Gene co-expression network
sample Sobic001G298100 Sobic001G298100 Sobic008G113400 Sobic008G113400 Sobic001G298100--Sobic008G113400 Sobic001G354900 Sobic001G354900 Sobic001G298100--Sobic001G354900 Sobic005G181100 Sobic005G181100 Sobic001G298100--Sobic005G181100 Sobic002G241000 Sobic002G241000 Sobic001G298100--Sobic002G241000 Sobic002G268200 Sobic002G268200 Sobic001G298100--Sobic002G268200 Sobic001G084300 Sobic001G084300 Sobic001G298100--Sobic001G084300 Sobic009G173400 Sobic009G173400 Sobic001G298100--Sobic009G173400 Sobic001G536300 Sobic001G536300 Sobic001G298100--Sobic001G536300 Sobic009G053201 Sobic009G053201 Sobic001G298100--Sobic009G053201 Sobic008G113400--Sobic009G173400 Sobic008G113400--Sobic001G298100 Sobic008G113400--Sobic001G354900 Sobic004G063750 Sobic004G063750 Sobic008G113400--Sobic004G063750 Sobic009G211500 Sobic009G211500 Sobic008G113400--Sobic009G211500 Sobic001G431200 Sobic001G431200 Sobic008G113400--Sobic001G431200 Sobic002G295000 Sobic002G295000 Sobic008G113400--Sobic002G295000 Sobic001G213200 Sobic001G213200 Sobic008G113400--Sobic001G213200 Sobic003G393001 Sobic003G393001 Sobic008G113400--Sobic003G393001 Sobic001G354900--Sobic001G213200 Sobic001G075900 Sobic001G075900 Sobic001G354900--Sobic001G075900 Sobic003G073620 Sobic003G073620 Sobic001G354900--Sobic003G073620 Sobic001G354900--Sobic001G536300 Sobic001G354900--Sobic002G268200 Sobic001G523500 Sobic001G523500 Sobic001G354900--Sobic001G523500 Sobic001G354900--Sobic001G084300 Sobic002G202200 Sobic002G202200 Sobic001G354900--Sobic002G202200 Sobic004G221150 Sobic004G221150 Sobic001G354900--Sobic004G221150 Sobic010G021401 Sobic010G021401 Sobic005G181100--Sobic010G021401 Sobic006G053000 Sobic006G053000 Sobic005G181100--Sobic006G053000 Sobic009G184500 Sobic009G184500 Sobic005G181100--Sobic009G184500 Sobic001G527900 Sobic001G527900 Sobic005G181100--Sobic001G527900 Sobic008G192800 Sobic008G192800 Sobic005G181100--Sobic008G192800 Sobic004G184500 Sobic004G184500 Sobic005G181100--Sobic004G184500 Sobic010G278300 Sobic010G278300 Sobic005G181100--Sobic010G278300 Sobic010G150600 Sobic010G150600 Sobic005G181100--Sobic010G150600 Sobic009G004500 Sobic009G004500 Sobic005G181100--Sobic009G004500 Sobic001G227100 Sobic001G227100 Sobic002G241000--Sobic001G227100 Sobic002G241000--Sobic004G063750 Sobic006G082700 Sobic006G082700 Sobic002G241000--Sobic006G082700 Sobic007G135900 Sobic007G135900 Sobic002G241000--Sobic007G135900 Sobic002G059600 Sobic002G059600 Sobic002G241000--Sobic002G059600 Sobic003G438200 Sobic003G438200 Sobic002G241000--Sobic003G438200 Sobic002G241000--Sobic001G298100 Sobic002G241000--Sobic002G295000 Sobic010G212000 Sobic010G212000 Sobic002G241000--Sobic010G212000 Sobic002G268200--Sobic001G354900 Sobic004G287500 Sobic004G287500 Sobic002G268200--Sobic004G287500 Sobic003G145200 Sobic003G145200 Sobic002G268200--Sobic003G145200 Sobic007G153300 Sobic007G153300 Sobic002G268200--Sobic007G153300 Sobic002G268200--Sobic004G221150 Sobic002G268200--Sobic001G523500 Sobic002G287500 Sobic002G287500 Sobic002G268200--Sobic002G287500 Sobic006G186200 Sobic006G186200 Sobic002G268200--Sobic006G186200 Sobic006G163650 Sobic006G163650 Sobic002G268200--Sobic006G163650 Sobic004G073700 Sobic004G073700 Sobic001G084300--Sobic004G073700 Sobic002G152400 Sobic002G152400 Sobic001G084300--Sobic002G152400 Sobic003G390600 Sobic003G390600 Sobic001G084300--Sobic003G390600 Sobic002G269700 Sobic002G269700 Sobic001G084300--Sobic002G269700 Sobic001G084300--Sobic001G354900 Sobic003G281400 Sobic003G281400 Sobic001G084300--Sobic003G281400 Sobic001G084300--Sobic001G536300 Sobic006G027800 Sobic006G027800 Sobic001G084300--Sobic006G027800 Sobic008G047900 Sobic008G047900 Sobic001G084300--Sobic008G047900 Sobic009G173400--Sobic008G113400 Sobic009G173400--Sobic009G211500 Sobic009G173400--Sobic001G298100 Sobic007G156400 Sobic007G156400 Sobic009G173400--Sobic007G156400 Sobic007G072700 Sobic007G072700 Sobic009G173400--Sobic007G072700 Sobic004G282200 Sobic004G282200 Sobic009G173400--Sobic004G282200 Sobic004G264800 Sobic004G264800 Sobic009G173400--Sobic004G264800 Sobic007G064400 Sobic007G064400 Sobic009G173400--Sobic007G064400 Sobic006G264100 Sobic006G264100 Sobic009G173400--Sobic006G264100 Sobic001G536300--Sobic003G145200 Sobic005G086700 Sobic005G086700 Sobic001G536300--Sobic005G086700 Sobic001G536300--Sobic001G354900 Sobic004G258800 Sobic004G258800 Sobic001G536300--Sobic004G258800 Sobic007G174000 Sobic007G174000 Sobic001G536300--Sobic007G174000 Sobic001G536300--Sobic001G084300 Sobic004G045700 Sobic004G045700 Sobic001G536300--Sobic004G045700 Sobic010G275600 Sobic010G275600 Sobic001G536300--Sobic010G275600 Sobic001G536300--Sobic004G073700 Sobic002G284701 Sobic002G284701 Sobic009G053201--Sobic002G284701 Sobic003G279600 Sobic003G279600 Sobic009G053201--Sobic003G279600 Sobic009G242032 Sobic009G242032 Sobic009G053201--Sobic009G242032 Sobic003G119266 Sobic003G119266 Sobic009G053201--Sobic003G119266 Sobic001G309000 Sobic001G309000 Sobic009G053201--Sobic001G309000 Sobic010G132300 Sobic010G132300 Sobic009G053201--Sobic010G132300 Sobic006G110600 Sobic006G110600 Sobic009G053201--Sobic006G110600 Sobic004G160950 Sobic004G160950 Sobic009G053201--Sobic004G160950 Sobic004G069600 Sobic004G069600 Sobic009G053201--Sobic004G069600
Octagon: transcription factors


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