Gene annotation
Transcriptome id Sobic.009G090000.1
Synonym SCPL27
Functional annotation OsSCP28 - Putative Serine Carboxypeptidase homologue, expressed
UniProt A0A1B6P7H6
Pfam PF00450
Panther DB PTHR11802 PTHR11802:SF71
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity


Orthologs (automatic annotation)
TAIR AT3G07990 : serine carboxypeptidase-like 27
RAP-DB (Rice) LOC_Os05g18604.1 : OsSCP28 - Putative Serine Carboxypeptidase homologue, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G077633 - -
2 Sobic.003G098600 expressed protein -
3 Sobic.007G133400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.009G032600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.010G086800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.003G108000 expressed protein -
7 Sobic.006G001000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450 93A2, putative, expressed -
8 Sobic.001G405000 MRH1, putative, expressed -
9 Sobic.008G163000 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR57 - Auxin-responsive SAUR gene family member, expressed -
10 Sobic.001G275600 peptide transporter PTR2, putative, expressed -
11 Sobic.008G107100 cytochrome P450, putative, expressed -
12 Sobic.003G427900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
13 Sobic.004G168700 harpin-induced protein 1 domain containing protein, expressed -
14 Sobic.009G162500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K05280: flavonoid 3'-monooxygenase
15 Sobic.004G203900 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
16 Sobic.002G003200 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.001G345900 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.009G215600 expressed protein -
19 Sobic.006G236500 RNA recognition motif containing protein, putative, expressed -
20 Sobic.001G479800 glycosyl transferase, putative, expressed -


Gene co-expression network
sample Sobic009G090000 Sobic009G090000 Sobic005G077633 Sobic005G077633 Sobic009G090000--Sobic005G077633 Sobic003G098600 Sobic003G098600 Sobic009G090000--Sobic003G098600 Sobic007G133400 Sobic007G133400 Sobic009G090000--Sobic007G133400 Sobic009G032600 Sobic009G032600 Sobic009G090000--Sobic009G032600 Sobic010G086800 Sobic010G086800 Sobic009G090000--Sobic010G086800 Sobic003G108000 Sobic003G108000 Sobic009G090000--Sobic003G108000 Sobic006G001000 Sobic006G001000 Sobic009G090000--Sobic006G001000 Sobic001G405000 Sobic001G405000 Sobic009G090000--Sobic001G405000 Sobic008G163000 Sobic008G163000 Sobic009G090000--Sobic008G163000 Sobic005G077633--Sobic009G090000 Sobic001G262400 Sobic001G262400 Sobic005G077633--Sobic001G262400 Sobic002G317350 Sobic002G317350 Sobic005G077633--Sobic002G317350 Sobic003G096100 Sobic003G096100 Sobic005G077633--Sobic003G096100 Sobic005G077633--Sobic001G405000 Sobic007G075700 Sobic007G075700 Sobic005G077633--Sobic007G075700 Sobic001G453200 Sobic001G453200 Sobic005G077633--Sobic001G453200 Sobic010G240600 Sobic010G240600 Sobic005G077633--Sobic010G240600 Sobic010G240700 Sobic010G240700 Sobic005G077633--Sobic010G240700 Sobic004G243400 Sobic004G243400 Sobic003G098600--Sobic004G243400 Sobic004G203900 Sobic004G203900 Sobic003G098600--Sobic004G203900 Sobic001G021500 Sobic001G021500 Sobic003G098600--Sobic001G021500 Sobic009G055900 Sobic009G055900 Sobic003G098600--Sobic009G055900 Sobic004G168700 Sobic004G168700 Sobic003G098600--Sobic004G168700 Sobic003G098600--Sobic001G405000 Sobic003G071400 Sobic003G071400 Sobic003G098600--Sobic003G071400 Sobic007G166600 Sobic007G166600 Sobic003G098600--Sobic007G166600 Sobic001G099100 Sobic001G099100 Sobic003G098600--Sobic001G099100 Sobic003G146300 Sobic003G146300 Sobic007G133400--Sobic003G146300 Sobic007G133400--Sobic003G098600 Sobic009G034400 Sobic009G034400 Sobic007G133400--Sobic009G034400 Sobic006G184100 Sobic006G184100 Sobic007G133400--Sobic006G184100 Sobic001G479800 Sobic001G479800 Sobic007G133400--Sobic001G479800 Sobic004G122000 Sobic004G122000 Sobic007G133400--Sobic004G122000 Sobic007G037000 Sobic007G037000 Sobic007G133400--Sobic007G037000 Sobic001G335201 Sobic001G335201 Sobic007G133400--Sobic001G335201 Sobic001G127400 Sobic001G127400 Sobic007G133400--Sobic001G127400 Sobic002G072200 Sobic002G072200 Sobic009G032600--Sobic002G072200 Sobic009G032600--Sobic010G086800 Sobic009G032600--Sobic004G168700 Sobic003G062000 Sobic003G062000 Sobic009G032600--Sobic003G062000 Sobic009G232200 Sobic009G232200 Sobic009G032600--Sobic009G232200 Sobic009G226900 Sobic009G226900 Sobic009G032600--Sobic009G226900 Sobic006G075000 Sobic006G075000 Sobic009G032600--Sobic006G075000 Sobic004G319600 Sobic004G319600 Sobic009G032600--Sobic004G319600 Sobic006G036400 Sobic006G036400 Sobic009G032600--Sobic006G036400 Sobic010G086800--Sobic003G062000 Sobic010G086800--Sobic004G168700 Sobic010G086800--Sobic009G032600 Sobic010G086800--Sobic006G036400 Sobic010G086800--Sobic009G226900 Sobic003G427900 Sobic003G427900 Sobic010G086800--Sobic003G427900 Sobic010G086800--Sobic002G072200 Sobic001G107100 Sobic001G107100 Sobic010G086800--Sobic001G107100 Sobic009G162500 Sobic009G162500 Sobic010G086800--Sobic009G162500 Sobic009G151000 Sobic009G151000 Sobic003G108000--Sobic009G151000 Sobic010G196400 Sobic010G196400 Sobic003G108000--Sobic010G196400 Sobic009G119400 Sobic009G119400 Sobic003G108000--Sobic009G119400 Sobic001G275600 Sobic001G275600 Sobic003G108000--Sobic001G275600 Sobic003G108000--Sobic008G163000 Sobic003G108000--Sobic004G168700 Sobic003G108000--Sobic006G001000 Sobic001G307300 Sobic001G307300 Sobic003G108000--Sobic001G307300 Sobic003G085200 Sobic003G085200 Sobic003G108000--Sobic003G085200 Sobic006G001000--Sobic001G275600 Sobic006G001000--Sobic008G163000 Sobic006G001000--Sobic009G151000 Sobic002G003200 Sobic002G003200 Sobic006G001000--Sobic002G003200 Sobic003G352800 Sobic003G352800 Sobic006G001000--Sobic003G352800 Sobic006G001000--Sobic003G108000 Sobic009G215600 Sobic009G215600 Sobic006G001000--Sobic009G215600 Sobic004G344200 Sobic004G344200 Sobic006G001000--Sobic004G344200 Sobic006G001000--Sobic003G427900 Sobic001G405000--Sobic009G055900 Sobic001G405000--Sobic002G003200 Sobic001G405000--Sobic004G243400 Sobic001G405000--Sobic003G071400 Sobic001G405000--Sobic008G163000 Sobic001G405000--Sobic001G275600 Sobic002G201100 Sobic002G201100 Sobic001G405000--Sobic002G201100 Sobic002G377300 Sobic002G377300 Sobic001G405000--Sobic002G377300 Sobic001G405000--Sobic004G168700 Sobic008G163000--Sobic001G275600 Sobic008G163000--Sobic006G001000 Sobic008G163000--Sobic009G119400 Sobic008G163000--Sobic004G344200 Sobic008G164900 Sobic008G164900 Sobic008G163000--Sobic008G164900 Sobic008G163000--Sobic009G151000 Sobic008G163000--Sobic010G196400 Sobic008G163000--Sobic002G003200 Sobic008G163000--Sobic003G108000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.