Gene annotation
Transcriptome id Sobic.001G479800.2,Sobic.001G479800.1
Synonym Sb01g044930, PGSIP3, GUX2
Functional annotation glycosyl transferase, putative, expressed
UniProt C5WUW4 , C5WVP9
Pfam PF01501
Panther DB PTHR11183 PTHR11183:SF44
NCBI CDD KOG1950; Glycosyl transferase, family 8 - glycogenin
KEGG Orthology -
Gene Ontology GO:0016757; transferase activity, transferring glycosyl groups GO:0015020glucuronosyltransferase activity GO:0009834plant-type secondary cell wall biogenesis GO:0005794Golgi apparatus


Orthologs (automatic annotation)
TAIR AT4G33330 : plant glycogenin-like starch initiation protein 3
RAP-DB (Rice) LOC_Os03g08600.1 : glycosyl transferase, putative, expressed
MaizeGDB (Corn) Zm00025a000965
Brachypodium KQK23268 , KQJ85533
Barley -
Wheat TraesCS4B02G301200 , TraesCS3B02G414000 , TraesCS3D02G374500 , TraesCS4D02G299500 , TraesCS4A02G004100
Populus -


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cDNA sequences
Sobic.001G479800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G106800 isoflavone reductase, putative, expressed -
2 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
3 Sobic.009G214600 possible lysine decarboxylase domain containing protein, expressed -
4 Sobic.001G089100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
5 Sobic.004G164500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
6 Sobic.001G348900 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
7 Sobic.003G328800 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
8 Sobic.006G133600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
9 Sobic.009G026200 IQ calmodulin-binding motif domain containing protein, expressed -
10 Sobic.001G311000 expansin precursor, putative, expressed -
11 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
12 Sobic.004G198000 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
13 Sobic.010G077600 gb protein, putative, expressed -
14 Sobic.003G397300 - -
15 Sobic.006G213100 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
16 Sobic.007G126200 mitosis protein dim1, putative, expressed K12859: TXNL4A, U5 snRNP protein, DIM1 family
17 Sobic.006G194150 - -
18 Sobic.001G471900 C2 domain containing protein, putative, expressed -
19 Sobic.002G017300 expressed protein -
20 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein


Gene co-expression network
sample Sobic001G479800 Sobic001G479800 Sobic008G106800 Sobic008G106800 Sobic001G479800--Sobic008G106800 Sobic009G065000 Sobic009G065000 Sobic001G479800--Sobic009G065000 Sobic009G214600 Sobic009G214600 Sobic001G479800--Sobic009G214600 Sobic001G089100 Sobic001G089100 Sobic001G479800--Sobic001G089100 Sobic004G164500 Sobic004G164500 Sobic001G479800--Sobic004G164500 Sobic001G348900 Sobic001G348900 Sobic001G479800--Sobic001G348900 Sobic003G328800 Sobic003G328800 Sobic001G479800--Sobic003G328800 Sobic006G133600 Sobic006G133600 Sobic001G479800--Sobic006G133600 Sobic009G026200 Sobic009G026200 Sobic001G479800--Sobic009G026200 Sobic008G106800--Sobic004G164500 Sobic001G471900 Sobic001G471900 Sobic008G106800--Sobic001G471900 Sobic001G056700 Sobic001G056700 Sobic008G106800--Sobic001G056700 Sobic008G106800--Sobic009G065000 Sobic003G273100 Sobic003G273100 Sobic008G106800--Sobic003G273100 Sobic003G137400 Sobic003G137400 Sobic008G106800--Sobic003G137400 Sobic001G311000 Sobic001G311000 Sobic008G106800--Sobic001G311000 Sobic002G278300 Sobic002G278300 Sobic008G106800--Sobic002G278300 Sobic001G230700 Sobic001G230700 Sobic008G106800--Sobic001G230700 Sobic009G065000--Sobic004G164500 Sobic009G065000--Sobic001G311000 Sobic001G206000 Sobic001G206000 Sobic009G065000--Sobic001G206000 Sobic009G065000--Sobic008G106800 Sobic006G257900 Sobic006G257900 Sobic009G065000--Sobic006G257900 Sobic009G065000--Sobic001G471900 Sobic007G177100 Sobic007G177100 Sobic009G065000--Sobic007G177100 Sobic010G228600 Sobic010G228600 Sobic009G065000--Sobic010G228600 Sobic003G116700 Sobic003G116700 Sobic009G065000--Sobic003G116700 Sobic003G044900 Sobic003G044900 Sobic009G214600--Sobic003G044900 Sobic007G094801 Sobic007G094801 Sobic009G214600--Sobic007G094801 SobicK016900 SobicK016900 Sobic009G214600--SobicK016900 Sobic004G016500 Sobic004G016500 Sobic009G214600--Sobic004G016500 Sobic004G240900 Sobic004G240900 Sobic009G214600--Sobic004G240900 Sobic009G214600--Sobic006G133600 Sobic006G213100 Sobic006G213100 Sobic009G214600--Sobic006G213100 Sobic002G150766 Sobic002G150766 Sobic009G214600--Sobic002G150766 Sobic001G046600 Sobic001G046600 Sobic009G214600--Sobic001G046600 Sobic001G089100--Sobic006G213100 Sobic001G089100--Sobic009G026200 Sobic001G089100--Sobic001G479800 Sobic003G151300 Sobic003G151300 Sobic001G089100--Sobic003G151300 Sobic001G089100--Sobic003G328800 Sobic001G089100--Sobic006G133600 Sobic001G089100--Sobic008G106800 Sobic004G134100 Sobic004G134100 Sobic001G089100--Sobic004G134100 Sobic001G089100--Sobic001G348900 Sobic004G164500--Sobic001G471900 Sobic004G164500--Sobic001G311000 Sobic004G164500--Sobic009G065000 Sobic004G164500--Sobic008G106800 Sobic004G164500--Sobic001G056700 Sobic010G154150 Sobic010G154150 Sobic004G164500--Sobic010G154150 Sobic004G164500--Sobic006G257900 Sobic004G164500--Sobic010G228600 Sobic004G164500--Sobic007G177100 Sobic001G348900--Sobic001G479800 Sobic001G348900--Sobic001G089100 Sobic001G348900--Sobic009G026200 Sobic001G348900--Sobic006G213100 Sobic001G348900--Sobic006G133600 Sobic001G516500 Sobic001G516500 Sobic001G348900--Sobic001G516500 Sobic008G174800 Sobic008G174800 Sobic001G348900--Sobic008G174800 Sobic001G348900--Sobic003G151300 Sobic001G348900--Sobic009G214600 Sobic003G328800--Sobic006G213100 Sobic005G012000 Sobic005G012000 Sobic003G328800--Sobic005G012000 Sobic004G164650 Sobic004G164650 Sobic003G328800--Sobic004G164650 Sobic003G397300 Sobic003G397300 Sobic003G328800--Sobic003G397300 Sobic008G126200 Sobic008G126200 Sobic003G328800--Sobic008G126200 Sobic003G380500 Sobic003G380500 Sobic003G328800--Sobic003G380500 Sobic001G082300 Sobic001G082300 Sobic003G328800--Sobic001G082300 Sobic008G136000 Sobic008G136000 Sobic003G328800--Sobic008G136000 Sobic003G328800--Sobic003G044900 Sobic006G133600--Sobic004G240900 Sobic006G262600 Sobic006G262600 Sobic006G133600--Sobic006G262600 Sobic006G133600--Sobic006G213100 Sobic006G133600--Sobic003G044900 Sobic006G133600--Sobic009G214600 Sobic007G099500 Sobic007G099500 Sobic006G133600--Sobic007G099500 Sobic001G024200 Sobic001G024200 Sobic006G133600--Sobic001G024200 Sobic009G059600 Sobic009G059600 Sobic006G133600--Sobic009G059600 Sobic002G221700 Sobic002G221700 Sobic006G133600--Sobic002G221700 Sobic009G026200--Sobic003G151300 Sobic009G026200--Sobic004G134100 Sobic001G069800 Sobic001G069800 Sobic009G026200--Sobic001G069800 Sobic009G026200--Sobic008G174800 Sobic010G224900 Sobic010G224900 Sobic009G026200--Sobic010G224900 Sobic008G008400 Sobic008G008400 Sobic009G026200--Sobic008G008400 Sobic004G051300 Sobic004G051300 Sobic009G026200--Sobic004G051300 Sobic004G006700 Sobic004G006700 Sobic009G026200--Sobic004G006700 Sobic001G230900 Sobic001G230900 Sobic009G026200--Sobic001G230900
Octagon: transcription factors


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