Gene annotation
Transcriptome id Sobic.009G145350.1
Synonym -
Functional annotation -
UniProt A0A1Z5R3M8
Pfam PF03953 PF00091
Panther DB PTHR11588 PTHR11588:SF91
NCBI CDD KOG1376; Alpha tubulin
KEGG Orthology K07374; tubulin alpha
Gene Ontology GO:0003924; GTPase activity GO:0007017microtubule-based process GO:0005874microtubule


Orthologs (automatic annotation)
TAIR AT1G50010 : tubulin alpha-2 chain
RAP-DB (Rice) LOC_Os11g14220.1 : tubulin/FtsZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007962 , Zm00025a016682
Brachypodium KQK13442
Barley HORVU1Hr1G081280.10 , HORVU1Hr1G081280.2 , HORVU1Hr1G081280.3 , HORVU1Hr1G081280.1 , HORVU1Hr1G081280.6 , HORVU1Hr1G081280.7 , HORVU1Hr1G081280.4 , HORVU1Hr1G081280.5 , HORVU1Hr1G081280.8 , HORVU1Hr1G081280.9 , HORVU4Hr1G009520.6 , HORVU4Hr1G009520.7 , HORVU4Hr1G009520.4 , HORVU4Hr1G009520.5 , HORVU4Hr1G009520.2 , HORVU4Hr1G009520.3 , HORVU4Hr1G009520.1
Wheat TraesCS4D02G057000 , TraesCS4A02G257800 , TraesCS1B02G364500 , TraesCS4B02G056700 , TraesCS1D02G353100 , TraesCS1D02G353100 , TraesCS1D02G353100 , TraesCS1D02G353100 , TraesCS1D02G353100 , TraesCS4B02G056700 , TraesCS1B02G364500 , TraesCS1B02G364500 , TraesCS1B02G364500 , TraesCS1A02G350200 , TraesCS1A02G350200 , TraesCS1A02G350200 , TraesCS1A02G350200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G178900 SNARE domain containing protein, putative, expressed K08506: syntaxin of plants SYP7
2 Sobic.005G065800 - -
3 Sobic.007G226900 ELF protein, expressed -
4 Sobic.009G143750 - -
5 Sobic.010G201332 - -
6 Sobic.007G183200 down-regulated TF in developmental senescence(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed K18486: heart-and neural crest derivatives-expressed protein 2
7 Sobic.006G183500 methyltransferase, putative, expressed -
8 Sobic.002G358450 - -
9 Sobic.005G118900 - -
10 Sobic.006G193801 - -
11 Sobic.007G098050 - -
12 Sobic.001G487900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
13 Sobic.007G126150 - -
14 Sobic.006G264400 co-chaperone GrpE protein, putative, expressed -
15 Sobic.004G206000 - -
16 Sobic.K032200 ATP synthase protein MI25, putative, expressed -
17 Sobic.004G126050 - -
18 Sobic.004G107550 - -
19 Sobic.001G471050 - -
20 Sobic.009G145200 Up-reguralion under drought(PubMedID : 24916767)@ethylene-responsive transcription factor("PubMedID : 26759170,PubMedID : 24597475")@AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic009G145350 Sobic009G145350 Sobic002G178900 Sobic002G178900 Sobic009G145350--Sobic002G178900 Sobic005G065800 Sobic005G065800 Sobic009G145350--Sobic005G065800 Sobic007G226900 Sobic007G226900 Sobic009G145350--Sobic007G226900 Sobic009G143750 Sobic009G143750 Sobic009G145350--Sobic009G143750 Sobic010G201332 Sobic010G201332 Sobic009G145350--Sobic010G201332 Sobic007G183200 Sobic007G183200 Sobic009G145350--Sobic007G183200 Sobic006G183500 Sobic006G183500 Sobic009G145350--Sobic006G183500 Sobic002G358450 Sobic002G358450 Sobic009G145350--Sobic002G358450 Sobic005G118900 Sobic005G118900 Sobic009G145350--Sobic005G118900 Sobic009G170050 Sobic009G170050 Sobic002G178900--Sobic009G170050 Sobic001G516400 Sobic001G516400 Sobic002G178900--Sobic001G516400 Sobic005G168900 Sobic005G168900 Sobic002G178900--Sobic005G168900 Sobic002G178900--Sobic007G226900 Sobic001G471050 Sobic001G471050 Sobic002G178900--Sobic001G471050 Sobic003G129700 Sobic003G129700 Sobic002G178900--Sobic003G129700 Sobic009G158150 Sobic009G158150 Sobic002G178900--Sobic009G158150 Sobic006G097600 Sobic006G097600 Sobic002G178900--Sobic006G097600 Sobic009G145200 Sobic009G145200 Sobic002G178900--Sobic009G145200 Sobic005G065800--Sobic010G201332 SobicK032200 SobicK032200 Sobic005G065800--SobicK032200 Sobic005G065800--Sobic002G358450 Sobic004G126050 Sobic004G126050 Sobic005G065800--Sobic004G126050 Sobic001G475950 Sobic001G475950 Sobic005G065800--Sobic001G475950 Sobic004G206000 Sobic004G206000 Sobic005G065800--Sobic004G206000 Sobic005G065800--Sobic007G183200 SobicK032600 SobicK032600 Sobic005G065800--SobicK032600 Sobic003G172966 Sobic003G172966 Sobic005G065800--Sobic003G172966 Sobic007G226900--Sobic009G145200 Sobic007G098050 Sobic007G098050 Sobic007G226900--Sobic007G098050 Sobic002G112500 Sobic002G112500 Sobic007G226900--Sobic002G112500 Sobic007G226900--Sobic001G471050 Sobic007G226900--Sobic004G206000 Sobic004G223700 Sobic004G223700 Sobic007G226900--Sobic004G223700 Sobic007G226900--SobicK032600 Sobic006G264400 Sobic006G264400 Sobic007G226900--Sobic006G264400 SobicK032400 SobicK032400 Sobic007G226900--SobicK032400 Sobic001G487900 Sobic001G487900 Sobic009G143750--Sobic001G487900 Sobic001G502801 Sobic001G502801 Sobic009G143750--Sobic001G502801 Sobic009G143750--Sobic007G183200 Sobic003G172600 Sobic003G172600 Sobic009G143750--Sobic003G172600 Sobic009G143750--Sobic002G358450 Sobic006G124800 Sobic006G124800 Sobic009G143750--Sobic006G124800 Sobic007G207100 Sobic007G207100 Sobic009G143750--Sobic007G207100 Sobic006G016950 Sobic006G016950 Sobic009G143750--Sobic006G016950 Sobic007G126150 Sobic007G126150 Sobic009G143750--Sobic007G126150 Sobic010G201332--SobicK032200 Sobic010G201332--Sobic005G065800 Sobic010G201332--Sobic002G358450 Sobic010G201332--Sobic001G475950 Sobic001G506200 Sobic001G506200 Sobic010G201332--Sobic001G506200 Sobic001G261444 Sobic001G261444 Sobic010G201332--Sobic001G261444 Sobic001G383350 Sobic001G383350 Sobic010G201332--Sobic001G383350 Sobic010G201332--Sobic007G183200 Sobic010G201332--Sobic004G126050 Sobic007G183200--Sobic002G358450 Sobic007G183200--Sobic010G201332 Sobic007G183200--Sobic001G261444 Sobic003G161900 Sobic003G161900 Sobic007G183200--Sobic003G161900 Sobic007G183200--Sobic005G065800 Sobic007G183200--SobicK032200 Sobic007G183200--Sobic001G475950 Sobic007G183200--Sobic009G143750 Sobic007G183200--Sobic001G383350 Sobic002G312000 Sobic002G312000 Sobic006G183500--Sobic002G312000 Sobic004G007133 Sobic004G007133 Sobic006G183500--Sobic004G007133 Sobic006G183500--Sobic009G145350 Sobic008G040501 Sobic008G040501 Sobic006G183500--Sobic008G040501 Sobic004G303466 Sobic004G303466 Sobic006G183500--Sobic004G303466 Sobic004G073232 Sobic004G073232 Sobic006G183500--Sobic004G073232 Sobic006G183500--Sobic005G118900 Sobic001G332933 Sobic001G332933 Sobic006G183500--Sobic001G332933 Sobic010G214150 Sobic010G214150 Sobic006G183500--Sobic010G214150 Sobic002G358450--Sobic010G201332 Sobic002G358450--Sobic001G475950 Sobic002G358450--Sobic007G183200 Sobic002G358450--SobicK032200 Sobic002G358450--Sobic005G065800 Sobic002G358450--Sobic004G126050 Sobic003G056200 Sobic003G056200 Sobic002G358450--Sobic003G056200 Sobic002G358450--Sobic001G261444 Sobic002G401533 Sobic002G401533 Sobic002G358450--Sobic002G401533 Sobic005G118900--Sobic001G487900 Sobic005G118900--Sobic003G172600 Sobic001G530201 Sobic001G530201 Sobic005G118900--Sobic001G530201 Sobic006G183100 Sobic006G183100 Sobic005G118900--Sobic006G183100 Sobic005G118900--Sobic006G124800 Sobic006G102200 Sobic006G102200 Sobic005G118900--Sobic006G102200 Sobic005G118900--Sobic009G143750 Sobic002G083332 Sobic002G083332 Sobic005G118900--Sobic002G083332 Sobic005G104900 Sobic005G104900 Sobic005G118900--Sobic005G104900
Octagon: transcription factors


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