Gene annotation
Transcriptome id Sobic.001G487900.2,Sobic.001G487900.3,Sobic.001G487900.1
Synonym Sb01g045650
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
calcium-binding protein, putative, expressed
UniProt A0A1B6QQ81 , A0A1Z5SBL6 , C5WVX4
Pfam PF08569
Panther DB PTHR10182 PTHR10182:SF16
NCBI CDD KOG1566; Conserved protein Mo25
KEGG Orthology K08272; CAB39, calcium binding protein 39
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47540 : Mo25 family protein
RAP-DB (Rice) LOC_Os03g07600.1 : calcium-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a000867
Brachypodium KQK23393 , PNT78077
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G143750 - -
2 Sobic.001G075500 - -
3 Sobic.006G124800 - -
4 Sobic.004G210400 expressed protein -
5 Sobic.003G172600 - -
6 Sobic.003G169100 photosystem II P680 chlorophyll A apoprotein, putative, expressed K02704: photosystem II CP47 chlorophyll apoprotein
7 Sobic.K032300 uncharacterized protein ycf72, putative -
8 Sobic.007G207100 chloroplast 30S ribosomal protein S3, putative, expressed K02982: RP-S3, small subunit ribosomal protein S3
9 Sobic.010G139200 photosystem II P680 chlorophyll A apoprotein, putative, expressed -
10 Sobic.002G150200 cytochrome c biogenesis protein ccsA, putative, expressed -
11 Sobic.001G182700 disease resistance RPP13-like protein 1, putative, expressed -
12 Sobic.003G130200 embryonic protein DC-8, putative, expressed -
13 Sobic.006G183100 RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed K10755: replication factor C subunit 2/4
14 Sobic.001G530201 - -
15 Sobic.001G230050 - K05580: NAD(P)H-quinone oxidoreductase subunit I
16 Sobic.007G145801 - K02712: photosystem II PsbK protein
17 Sobic.002G138400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed K01051: pectinesterase
18 Sobic.004G087050 - -
19 Sobic.009G123100 - K02710: photosystem II PsbI protein
K02712: photosystem II PsbK protein
20 Sobic.006G124700 chloroplast 30S ribosomal protein S8, putative, expressed K02994: RP-S8, small subunit ribosomal protein S8


Gene co-expression network
sample Sobic001G487900 Sobic001G487900 Sobic009G143750 Sobic009G143750 Sobic001G487900--Sobic009G143750 Sobic001G075500 Sobic001G075500 Sobic001G487900--Sobic001G075500 Sobic006G124800 Sobic006G124800 Sobic001G487900--Sobic006G124800 Sobic004G210400 Sobic004G210400 Sobic001G487900--Sobic004G210400 Sobic003G172600 Sobic003G172600 Sobic001G487900--Sobic003G172600 Sobic003G169100 Sobic003G169100 Sobic001G487900--Sobic003G169100 SobicK032300 SobicK032300 Sobic001G487900--SobicK032300 Sobic007G207100 Sobic007G207100 Sobic001G487900--Sobic007G207100 Sobic010G139200 Sobic010G139200 Sobic001G487900--Sobic010G139200 Sobic009G143750--Sobic001G487900 Sobic001G502801 Sobic001G502801 Sobic009G143750--Sobic001G502801 Sobic007G183200 Sobic007G183200 Sobic009G143750--Sobic007G183200 Sobic009G143750--Sobic003G172600 Sobic002G358450 Sobic002G358450 Sobic009G143750--Sobic002G358450 Sobic009G143750--Sobic006G124800 Sobic009G143750--Sobic007G207100 Sobic006G016950 Sobic006G016950 Sobic009G143750--Sobic006G016950 Sobic007G126150 Sobic007G126150 Sobic009G143750--Sobic007G126150 Sobic001G075500--Sobic006G124800 Sobic001G075500--Sobic001G487900 Sobic001G075500--SobicK032300 Sobic001G075500--Sobic004G210400 Sobic001G075500--Sobic010G139200 Sobic001G182700 Sobic001G182700 Sobic001G075500--Sobic001G182700 Sobic002G150200 Sobic002G150200 Sobic001G075500--Sobic002G150200 Sobic003G130200 Sobic003G130200 Sobic001G075500--Sobic003G130200 Sobic004G087050 Sobic004G087050 Sobic001G075500--Sobic004G087050 Sobic006G124800--Sobic003G172600 Sobic006G124800--SobicK032300 Sobic001G230050 Sobic001G230050 Sobic006G124800--Sobic001G230050 Sobic007G145801 Sobic007G145801 Sobic006G124800--Sobic007G145801 Sobic006G183100 Sobic006G183100 Sobic006G124800--Sobic006G183100 Sobic009G123100 Sobic009G123100 Sobic006G124800--Sobic009G123100 Sobic010G206600 Sobic010G206600 Sobic006G124800--Sobic010G206600 Sobic006G124700 Sobic006G124700 Sobic006G124800--Sobic006G124700 Sobic003G169200 Sobic003G169200 Sobic006G124800--Sobic003G169200 Sobic004G210400--Sobic003G130200 Sobic004G210400--Sobic002G150200 Sobic002G148166 Sobic002G148166 Sobic004G210400--Sobic002G148166 Sobic003G168425 Sobic003G168425 Sobic004G210400--Sobic003G168425 Sobic005G110493 Sobic005G110493 Sobic004G210400--Sobic005G110493 Sobic004G210400--Sobic010G139200 Sobic004G210400--Sobic004G087050 Sobic003G172701 Sobic003G172701 Sobic004G210400--Sobic003G172701 Sobic005G002050 Sobic005G002050 Sobic004G210400--Sobic005G002050 Sobic003G172600--Sobic001G230050 Sobic003G172600--Sobic006G124800 Sobic003G172600--Sobic003G169200 Sobic003G172600--SobicK032300 Sobic003G173116 Sobic003G173116 Sobic003G172600--Sobic003G173116 Sobic005G139900 Sobic005G139900 Sobic003G172600--Sobic005G139900 Sobic003G117850 Sobic003G117850 Sobic003G172600--Sobic003G117850 Sobic003G172600--Sobic010G206600 Sobic001G530201 Sobic001G530201 Sobic003G172600--Sobic001G530201 Sobic003G169000 Sobic003G169000 Sobic003G169100--Sobic003G169000 Sobic007G065000 Sobic007G065000 Sobic003G169100--Sobic007G065000 Sobic003G169100--Sobic007G145801 Sobic003G169100--Sobic009G123100 Sobic003G168200 Sobic003G168200 Sobic003G169100--Sobic003G168200 Sobic003G169100--SobicK032300 Sobic007G149200 Sobic007G149200 Sobic003G169100--Sobic007G149200 Sobic003G172500 Sobic003G172500 Sobic003G169100--Sobic003G172500 Sobic003G169100--Sobic010G139200 SobicK032300--Sobic001G230050 SobicK032300--Sobic003G172500 SobicK032300--Sobic006G124700 SobicK032300--Sobic010G206600 SobicK032300--Sobic009G123100 SobicK032300--Sobic006G183100 Sobic010G052866 Sobic010G052866 SobicK032300--Sobic010G052866 SobicK032300--Sobic006G124800 SobicK032300--Sobic003G169200 Sobic007G207100--Sobic002G150200 Sobic007G207100--Sobic004G210400 Sobic007G207100--Sobic003G130200 Sobic007G207100--Sobic003G117850 Sobic007G207100--Sobic002G148166 Sobic007G207100--Sobic005G002050 Sobic002G270733 Sobic002G270733 Sobic007G207100--Sobic002G270733 Sobic007G207100--Sobic003G172600 Sobic007G207100--Sobic001G487900 Sobic010G139200--Sobic004G087050 Sobic010G139200--Sobic003G168425 Sobic010G139200--Sobic005G110493 Sobic010G139200--Sobic003G172500 Sobic010G139200--Sobic003G168200 Sobic010G139200--Sobic004G210400 Sobic003G169300 Sobic003G169300 Sobic010G139200--Sobic003G169300 Sobic010G139200--SobicK032300 Sobic010G139200--Sobic009G123100
Octagon: transcription factors


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