Gene annotation
Transcriptome id Sobic.009G153200.1
Synonym Sb09g021670, CMPG2, ATCMPG2
Functional annotation U-box domain containing protein, expressed
UniProt A0A1B6P903
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G18710 : plant U-box 29
RAP-DB (Rice) LOC_Os05g36360.1 : U-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043791
Brachypodium KQK06037
Barley HORVU1Hr1G074180.1 , HORVU1Hr1G074180.2
Wheat -
Populus -


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cDNA sequences
Sobic.009G153200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
2 Sobic.001G198700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
3 Sobic.009G233900 dehydrogenase, putative, expressed -
4 Sobic.004G078600 lipoxygenase, putative, expressed K00454: lipoxygenase
5 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
6 Sobic.001G019300 WD40-like Beta Propeller Repeat family protein, expressed -
7 Sobic.009G038200 expressed protein -
8 Sobic.001G520100 MLO domain containing protein, putative, expressed K08472: mlo protein
9 Sobic.001G449800 OsWAK25 - OsWAK receptor-like protein kinase, expressed -
10 Sobic.010G225500 - -
11 Sobic.004G195800 heavy metal associated domain containing protein, expressed -
12 Sobic.002G209100 glutamate receptor, putative, expressed -
13 Sobic.005G063900 expressed protein -
14 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
15 Sobic.005G093300 - -
16 Sobic.001G321600 dehydration response related protein, putative, expressed -
17 Sobic.009G252100 expressed protein -
18 Sobic.002G195700 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
19 Sobic.010G120800 Leucine-rich repeat receptor-like serine/threonine/tyrosine protein kinase(PubMedID : 31721651)@protein kinase domain containing protein, expressed -
20 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase


Gene co-expression network
sample Sobic009G153200 Sobic009G153200 Sobic001G201800 Sobic001G201800 Sobic009G153200--Sobic001G201800 Sobic001G198700 Sobic001G198700 Sobic009G153200--Sobic001G198700 Sobic009G233900 Sobic009G233900 Sobic009G153200--Sobic009G233900 Sobic004G078600 Sobic004G078600 Sobic009G153200--Sobic004G078600 Sobic002G041800 Sobic002G041800 Sobic009G153200--Sobic002G041800 Sobic001G019300 Sobic001G019300 Sobic009G153200--Sobic001G019300 Sobic009G038200 Sobic009G038200 Sobic009G153200--Sobic009G038200 Sobic001G520100 Sobic001G520100 Sobic009G153200--Sobic001G520100 Sobic001G449800 Sobic001G449800 Sobic009G153200--Sobic001G449800 Sobic001G201800--Sobic004G078600 Sobic009G115400 Sobic009G115400 Sobic001G201800--Sobic009G115400 Sobic002G423600 Sobic002G423600 Sobic001G201800--Sobic002G423600 Sobic001G012000 Sobic001G012000 Sobic001G201800--Sobic001G012000 Sobic009G252100 Sobic009G252100 Sobic001G201800--Sobic009G252100 Sobic002G202700 Sobic002G202700 Sobic001G201800--Sobic002G202700 Sobic006G045000 Sobic006G045000 Sobic001G201800--Sobic006G045000 Sobic001G056400 Sobic001G056400 Sobic001G201800--Sobic001G056400 Sobic002G108400 Sobic002G108400 Sobic001G201800--Sobic002G108400 Sobic003G106500 Sobic003G106500 Sobic001G198700--Sobic003G106500 Sobic001G198700--Sobic001G019300 Sobic002G265400 Sobic002G265400 Sobic001G198700--Sobic002G265400 Sobic002G195700 Sobic002G195700 Sobic001G198700--Sobic002G195700 Sobic008G063100 Sobic008G063100 Sobic001G198700--Sobic008G063100 Sobic004G063200 Sobic004G063200 Sobic001G198700--Sobic004G063200 Sobic005G093300 Sobic005G093300 Sobic001G198700--Sobic005G093300 Sobic002G371900 Sobic002G371900 Sobic001G198700--Sobic002G371900 Sobic001G198700--Sobic004G078600 Sobic001G056500 Sobic001G056500 Sobic009G233900--Sobic001G056500 Sobic009G075100 Sobic009G075100 Sobic009G233900--Sobic009G075100 Sobic004G209500 Sobic004G209500 Sobic009G233900--Sobic004G209500 Sobic009G233900--Sobic002G423600 Sobic009G233900--Sobic004G078600 Sobic004G217700 Sobic004G217700 Sobic009G233900--Sobic004G217700 Sobic009G233900--Sobic001G201800 Sobic009G233900--Sobic001G449800 Sobic009G233900--Sobic009G115400 Sobic004G078600--Sobic001G201800 Sobic004G078600--Sobic002G423600 Sobic004G078600--Sobic009G115400 Sobic004G078600--Sobic002G041800 Sobic004G078600--Sobic009G075100 Sobic005G182701 Sobic005G182701 Sobic004G078600--Sobic005G182701 Sobic004G078600--Sobic001G012000 Sobic004G078600--Sobic009G252100 Sobic007G055600 Sobic007G055600 Sobic004G078600--Sobic007G055600 Sobic005G085500 Sobic005G085500 Sobic002G041800--Sobic005G085500 Sobic002G041800--Sobic004G078600 Sobic002G041800--Sobic002G423600 Sobic004G195800 Sobic004G195800 Sobic002G041800--Sobic004G195800 Sobic002G041800--Sobic009G252100 Sobic002G041800--Sobic004G217700 Sobic002G209100 Sobic002G209100 Sobic002G041800--Sobic002G209100 Sobic006G060800 Sobic006G060800 Sobic002G041800--Sobic006G060800 Sobic002G041800--Sobic001G201800 Sobic001G019300--Sobic002G265400 Sobic002G281000 Sobic002G281000 Sobic001G019300--Sobic002G281000 Sobic005G063900 Sobic005G063900 Sobic001G019300--Sobic005G063900 Sobic001G321600 Sobic001G321600 Sobic001G019300--Sobic001G321600 Sobic001G005500 Sobic001G005500 Sobic001G019300--Sobic001G005500 Sobic008G073400 Sobic008G073400 Sobic001G019300--Sobic008G073400 Sobic001G019300--Sobic002G195700 Sobic005G190900 Sobic005G190900 Sobic001G019300--Sobic005G190900 Sobic001G019300--Sobic001G198700 Sobic003G284300 Sobic003G284300 Sobic009G038200--Sobic003G284300 Sobic009G038200--Sobic005G063900 Sobic009G038200--Sobic001G321600 Sobic009G038200--Sobic001G019300 Sobic009G038200--Sobic005G190900 Sobic009G038200--Sobic001G449800 Sobic009G038200--Sobic002G209100 Sobic009G038200--Sobic009G153200 Sobic009G038200--Sobic002G041800 Sobic001G520100--Sobic001G321600 Sobic010G089200 Sobic010G089200 Sobic001G520100--Sobic010G089200 Sobic001G520100--Sobic005G063900 Sobic001G520100--Sobic001G019300 Sobic010G179500 Sobic010G179500 Sobic001G520100--Sobic010G179500 Sobic002G257100 Sobic002G257100 Sobic001G520100--Sobic002G257100 Sobic001G520100--Sobic001G198700 Sobic001G520100--Sobic008G073400 Sobic001G520100--Sobic009G153200 Sobic001G449800--Sobic002G041800 Sobic001G449800--Sobic004G217700 Sobic001G449800--Sobic009G233900 Sobic001G449800--Sobic004G195800 Sobic010G225500 Sobic010G225500 Sobic001G449800--Sobic010G225500 Sobic001G449800--Sobic009G038200 Sobic001G432500 Sobic001G432500 Sobic001G449800--Sobic001G432500 Sobic001G449800--Sobic004G078600 Sobic001G449800--Sobic002G423600
Octagon: transcription factors


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