Gene annotation
Transcriptome id Sobic.009G154700.1
Synonym FD3, Sb09g021810, ATFD3
Functional annotation Ferredoxin-6 (PubMedID : 26186930)
2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
UniProt C5YYS6
Pfam PF00111
Panther DB PTHR19370 PTHR19370:SF114
NCBI CDD -
KEGG Orthology K02639; ferredoxin
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT2G27510 : ferredoxin 3
RAP-DB (Rice) LOC_Os05g37140.1 : 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037248 , Zm00025a043804
Brachypodium KQK12273
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G154700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G062600 limonoid UDP-glucosyltransferase, putative, expressed -
2 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
3 Sobic.004G349125 - -
4 Sobic.002G361800 expressed protein -
5 Sobic.008G106700 isoflavone reductase, putative, expressed -
6 Sobic.006G203700 EF hand family protein, putative, expressed -
7 Sobic.004G217800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ammonium transporter protein, putative, expressed K03320: amt, AMT, ammonium transporter, Amt family
8 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
9 Sobic.003G228600 cytochrome P450 72A1, putative, expressed -
10 Sobic.002G318100 expressed protein -
11 Sobic.003G079400 Ser/Thr protein kinase, putative, expressed -
12 Sobic.005G061200 dirigent, putative, expressed -
13 Sobic.006G197100 DNA binding protein, putative, expressed -
14 Sobic.005G107800 chalcone synthase, putative, expressed -
15 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
16 Sobic.002G210401 - -
17 Sobic.001G014000 P21-Rho-binding domain containing protein, putative, expressed -
18 Sobic.009G179900 OsCML9 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
19 Sobic.001G082600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed -
20 Sobic.007G030501 - -


Gene co-expression network
sample Sobic009G154700 Sobic009G154700 Sobic003G062600 Sobic003G062600 Sobic009G154700--Sobic003G062600 Sobic007G176000 Sobic007G176000 Sobic009G154700--Sobic007G176000 Sobic004G349125 Sobic004G349125 Sobic009G154700--Sobic004G349125 Sobic002G361800 Sobic002G361800 Sobic009G154700--Sobic002G361800 Sobic008G106700 Sobic008G106700 Sobic009G154700--Sobic008G106700 Sobic006G203700 Sobic006G203700 Sobic009G154700--Sobic006G203700 Sobic004G217800 Sobic004G217800 Sobic009G154700--Sobic004G217800 Sobic006G044100 Sobic006G044100 Sobic009G154700--Sobic006G044100 Sobic003G228600 Sobic003G228600 Sobic009G154700--Sobic003G228600 Sobic003G417800 Sobic003G417800 Sobic003G062600--Sobic003G417800 Sobic003G437200 Sobic003G437200 Sobic003G062600--Sobic003G437200 Sobic001G119400 Sobic001G119400 Sobic003G062600--Sobic001G119400 Sobic004G107700 Sobic004G107700 Sobic003G062600--Sobic004G107700 Sobic009G183400 Sobic009G183400 Sobic003G062600--Sobic009G183400 Sobic003G062600--Sobic006G044100 Sobic005G183100 Sobic005G183100 Sobic003G062600--Sobic005G183100 Sobic003G255200 Sobic003G255200 Sobic003G062600--Sobic003G255200 Sobic004G176600 Sobic004G176600 Sobic003G062600--Sobic004G176600 Sobic007G176100 Sobic007G176100 Sobic007G176000--Sobic007G176100 Sobic007G178900 Sobic007G178900 Sobic007G176000--Sobic007G178900 Sobic007G030501 Sobic007G030501 Sobic007G176000--Sobic007G030501 Sobic002G216100 Sobic002G216100 Sobic007G176000--Sobic002G216100 Sobic006G197100 Sobic006G197100 Sobic007G176000--Sobic006G197100 Sobic005G061200 Sobic005G061200 Sobic007G176000--Sobic005G061200 Sobic002G185800 Sobic002G185800 Sobic007G176000--Sobic002G185800 Sobic004G139300 Sobic004G139300 Sobic007G176000--Sobic004G139300 Sobic008G055100 Sobic008G055100 Sobic007G176000--Sobic008G055100 Sobic001G416200 Sobic001G416200 Sobic004G349125--Sobic001G416200 Sobic004G349125--Sobic006G197100 Sobic001G302600 Sobic001G302600 Sobic004G349125--Sobic001G302600 Sobic001G161500 Sobic001G161500 Sobic004G349125--Sobic001G161500 Sobic004G042000 Sobic004G042000 Sobic004G349125--Sobic004G042000 Sobic004G349125--Sobic003G228600 Sobic002G003800 Sobic002G003800 Sobic004G349125--Sobic002G003800 Sobic004G202400 Sobic004G202400 Sobic004G349125--Sobic004G202400 Sobic003G311800 Sobic003G311800 Sobic004G349125--Sobic003G311800 Sobic005G045600 Sobic005G045600 Sobic002G361800--Sobic005G045600 Sobic002G042200 Sobic002G042200 Sobic002G361800--Sobic002G042200 Sobic002G361800--Sobic007G030501 Sobic002G361800--Sobic002G216100 Sobic005G107800 Sobic005G107800 Sobic002G361800--Sobic005G107800 Sobic003G368600 Sobic003G368600 Sobic002G361800--Sobic003G368600 Sobic004G258900 Sobic004G258900 Sobic002G361800--Sobic004G258900 Sobic002G361800--Sobic009G154700 Sobic009G009200 Sobic009G009200 Sobic002G361800--Sobic009G009200 Sobic004G046200 Sobic004G046200 Sobic008G106700--Sobic004G046200 Sobic001G500000 Sobic001G500000 Sobic008G106700--Sobic001G500000 Sobic008G106700--Sobic006G044100 Sobic003G084400 Sobic003G084400 Sobic008G106700--Sobic003G084400 Sobic003G079400 Sobic003G079400 Sobic008G106700--Sobic003G079400 Sobic008G106700--Sobic009G183400 Sobic009G179900 Sobic009G179900 Sobic008G106700--Sobic009G179900 Sobic001G139100 Sobic001G139100 Sobic008G106700--Sobic001G139100 Sobic006G199800 Sobic006G199800 Sobic008G106700--Sobic006G199800 Sobic001G310300 Sobic001G310300 Sobic006G203700--Sobic001G310300 Sobic006G203700--Sobic002G003800 Sobic006G203700--Sobic004G042000 Sobic010G085800 Sobic010G085800 Sobic006G203700--Sobic010G085800 Sobic006G203700--Sobic006G197100 Sobic010G008400 Sobic010G008400 Sobic006G203700--Sobic010G008400 Sobic001G514200 Sobic001G514200 Sobic006G203700--Sobic001G514200 Sobic007G090469 Sobic007G090469 Sobic006G203700--Sobic007G090469 Sobic006G203700--Sobic001G500000 Sobic006G249300 Sobic006G249300 Sobic004G217800--Sobic006G249300 Sobic001G449600 Sobic001G449600 Sobic004G217800--Sobic001G449600 Sobic009G016300 Sobic009G016300 Sobic004G217800--Sobic009G016300 Sobic004G217800--Sobic003G255200 Sobic007G057000 Sobic007G057000 Sobic004G217800--Sobic007G057000 Sobic010G136000 Sobic010G136000 Sobic004G217800--Sobic010G136000 Sobic004G217800--Sobic009G183400 Sobic004G217800--Sobic003G062600 Sobic001G476500 Sobic001G476500 Sobic004G217800--Sobic001G476500 Sobic006G044100--Sobic004G046200 Sobic006G044100--Sobic004G176600 Sobic009G187200 Sobic009G187200 Sobic006G044100--Sobic009G187200 Sobic001G481400 Sobic001G481400 Sobic006G044100--Sobic001G481400 Sobic006G044100--Sobic008G106700 Sobic003G366600 Sobic003G366600 Sobic006G044100--Sobic003G366600 Sobic008G172600 Sobic008G172600 Sobic006G044100--Sobic008G172600 Sobic006G277600 Sobic006G277600 Sobic006G044100--Sobic006G277600 Sobic006G044100--Sobic003G255200 Sobic003G228600--Sobic004G349125 Sobic005G156500 Sobic005G156500 Sobic003G228600--Sobic005G156500 Sobic004G038700 Sobic004G038700 Sobic003G228600--Sobic004G038700 Sobic003G228600--Sobic006G197100 Sobic003G228600--Sobic001G416200 Sobic008G011700 Sobic008G011700 Sobic003G228600--Sobic008G011700 Sobic001G264000 Sobic001G264000 Sobic003G228600--Sobic001G264000 Sobic001G067100 Sobic001G067100 Sobic003G228600--Sobic001G067100 Sobic006G274933 Sobic006G274933 Sobic003G228600--Sobic006G274933
Octagon: transcription factors


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