Gene annotation
Transcriptome id Sobic.009G173800.1
Synonym Sb09g023450
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RING-H2 finger protein, putative, expressed
UniProt C5YZS6
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF74
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G10910 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g40020.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a027046 , Zm00025a039764 , Zm00025a043995
Brachypodium KQK01486 , KQK01487 , KQK01488
Barley HORVU1Hr1G069670.1
Wheat TraesCS3D02G338100
Populus -


JBrowse

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cDNA sequences
Sobic.009G173800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G115500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.008G095100 SAM domain containing protein, putative, expressed -
3 Sobic.002G064200 expressed protein -
4 Sobic.003G401500 expressed protein -
5 Sobic.002G202800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY62, expressed -
6 Sobic.003G325100 NB-ARC domain containing protein, expressed -
7 Sobic.009G082800 - -
8 Sobic.003G086200 expressed protein -
9 Sobic.002G173900 hydroquinone glucosyltransferase, putative, expressed K08237: hydroquinone glucosyltransferase
10 Sobic.004G138400 WRKY51, expressed -
11 Sobic.002G354400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyol transporter 5, putative, expressed -
12 Sobic.002G130500 expressed protein -
13 Sobic.010G046900 embryogenesis transmembrane protein, putative, expressed -
14 Sobic.009G115600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G109100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.001G330925 - -
17 Sobic.003G310200 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
18 Sobic.003G037100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.010G157500 zinc finger protein, putative, expressed -
20 Sobic.009G115300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic009G173800 Sobic009G173800 Sobic009G115500 Sobic009G115500 Sobic009G173800--Sobic009G115500 Sobic008G095100 Sobic008G095100 Sobic009G173800--Sobic008G095100 Sobic002G064200 Sobic002G064200 Sobic009G173800--Sobic002G064200 Sobic003G401500 Sobic003G401500 Sobic009G173800--Sobic003G401500 Sobic002G202800 Sobic002G202800 Sobic009G173800--Sobic002G202800 Sobic003G325100 Sobic003G325100 Sobic009G173800--Sobic003G325100 Sobic009G082800 Sobic009G082800 Sobic009G173800--Sobic009G082800 Sobic003G086200 Sobic003G086200 Sobic009G173800--Sobic003G086200 Sobic002G173900 Sobic002G173900 Sobic009G173800--Sobic002G173900 Sobic009G115500--Sobic002G064200 Sobic010G046900 Sobic010G046900 Sobic009G115500--Sobic010G046900 Sobic009G115500--Sobic002G202800 Sobic002G130500 Sobic002G130500 Sobic009G115500--Sobic002G130500 Sobic002G202700 Sobic002G202700 Sobic009G115500--Sobic002G202700 Sobic009G115300 Sobic009G115300 Sobic009G115500--Sobic009G115300 Sobic009G115500--Sobic002G173900 Sobic009G115500--Sobic009G173800 Sobic006G123400 Sobic006G123400 Sobic009G115500--Sobic006G123400 Sobic008G095100--Sobic003G325100 Sobic010G004500 Sobic010G004500 Sobic008G095100--Sobic010G004500 Sobic006G007450 Sobic006G007450 Sobic008G095100--Sobic006G007450 Sobic008G095100--Sobic009G173800 Sobic008G095100--Sobic009G082800 Sobic008G095100--Sobic002G202800 Sobic008G095100--Sobic002G064200 Sobic002G174801 Sobic002G174801 Sobic008G095100--Sobic002G174801 Sobic008G095100--Sobic003G401500 Sobic002G064200--Sobic002G202800 Sobic002G064200--Sobic009G115500 Sobic010G172300 Sobic010G172300 Sobic002G064200--Sobic010G172300 Sobic002G064200--Sobic002G202700 Sobic010G225500 Sobic010G225500 Sobic002G064200--Sobic010G225500 Sobic002G064200--Sobic002G130500 Sobic002G064200--Sobic002G173900 Sobic002G064200--Sobic006G007450 Sobic001G363200 Sobic001G363200 Sobic002G064200--Sobic001G363200 Sobic001G330925 Sobic001G330925 Sobic003G401500--Sobic001G330925 Sobic003G401500--Sobic009G173800 Sobic003G401500--Sobic002G064200 Sobic001G448800 Sobic001G448800 Sobic003G401500--Sobic001G448800 Sobic009G233900 Sobic009G233900 Sobic003G401500--Sobic009G233900 Sobic004G179500 Sobic004G179500 Sobic003G401500--Sobic004G179500 Sobic004G138400 Sobic004G138400 Sobic003G401500--Sobic004G138400 Sobic003G401500--Sobic009G115500 Sobic003G401500--Sobic009G082800 Sobic003G258700 Sobic003G258700 Sobic002G202800--Sobic003G258700 Sobic002G202800--Sobic002G064200 Sobic002G354400 Sobic002G354400 Sobic002G202800--Sobic002G354400 Sobic002G202800--Sobic003G325100 Sobic003G037100 Sobic003G037100 Sobic002G202800--Sobic003G037100 Sobic002G202800--Sobic009G115500 Sobic003G242800 Sobic003G242800 Sobic002G202800--Sobic003G242800 Sobic002G202800--Sobic001G363200 Sobic002G202800--Sobic002G202700 Sobic003G325100--Sobic004G138400 Sobic003G325100--Sobic002G202800 Sobic003G325100--Sobic010G004500 Sobic003G325100--Sobic002G064200 Sobic003G325100--Sobic008G095100 Sobic009G111800 Sobic009G111800 Sobic003G325100--Sobic009G111800 Sobic003G325100--Sobic003G242800 Sobic004G106200 Sobic004G106200 Sobic003G325100--Sobic004G106200 Sobic001G059300 Sobic001G059300 Sobic003G325100--Sobic001G059300 Sobic009G082800--Sobic002G064200 Sobic004G303500 Sobic004G303500 Sobic009G082800--Sobic004G303500 Sobic009G082800--Sobic010G172300 Sobic009G082800--Sobic009G115300 Sobic009G082800--Sobic010G225500 Sobic009G082800--Sobic010G046900 Sobic009G082800--Sobic002G202700 Sobic009G082800--Sobic008G095100 Sobic009G082800--Sobic002G173900 Sobic001G056500 Sobic001G056500 Sobic003G086200--Sobic001G056500 Sobic008G038100 Sobic008G038100 Sobic003G086200--Sobic008G038100 Sobic009G014600 Sobic009G014600 Sobic003G086200--Sobic009G014600 Sobic003G248901 Sobic003G248901 Sobic003G086200--Sobic003G248901 Sobic009G216050 Sobic009G216050 Sobic003G086200--Sobic009G216050 Sobic006G045000 Sobic006G045000 Sobic003G086200--Sobic006G045000 Sobic009G192100 Sobic009G192100 Sobic003G086200--Sobic009G192100 Sobic003G310200 Sobic003G310200 Sobic003G086200--Sobic003G310200 Sobic003G086200--Sobic009G233900 Sobic002G173900--Sobic006G123400 Sobic002G041800 Sobic002G041800 Sobic002G173900--Sobic002G041800 Sobic002G173900--Sobic002G130500 Sobic005G085500 Sobic005G085500 Sobic002G173900--Sobic005G085500 Sobic001G012000 Sobic001G012000 Sobic002G173900--Sobic001G012000 Sobic002G173900--Sobic003G310200 SobicK044407 SobicK044407 Sobic002G173900--SobicK044407 Sobic005G133166 Sobic005G133166 Sobic002G173900--Sobic005G133166 Sobic008G181801 Sobic008G181801 Sobic002G173900--Sobic008G181801
Octagon: transcription factors


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