Gene annotation
Transcriptome id Sobic.010G053200.1
Synonym Sb10g004650
Functional annotation transcription elongation factor 1, putative, expressed
UniProt C5Z4X9
Pfam PF05129
Panther DB PTHR20934:SF1 PTHR20934
NCBI CDD KOG3214; Uncharacterized Zn ribbon-containing protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46030 : -
RAP-DB (Rice) LOC_Os06g06270.1 : transcription elongation factor 1, putative, expressed
MaizeGDB (Corn) Zm00025a049943
Brachypodium PNT76509 , KQK19552
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G159500 AP2 domain containing protein, expressed K09286: EREBP-like factor
2 Sobic.001G539300 expressed protein -
3 Sobic.001G539300 expressed protein -
4 Sobic.001G539300 expressed protein -
5 Sobic.001G539300 expressed protein -
6 Sobic.001G539300 expressed protein -
7 Sobic.001G539300 expressed protein -
8 Sobic.004G292600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.010G156400 expressed protein -
10 Sobic.008G184700 CND41, chloroplast nucleoid DNA binding protein, putative, expressed -
11 Sobic.009G178550 - -
12 Sobic.008G026000 expressed protein -
13 Sobic.007G054900 plant protein of unknown function domain containing protein, expressed -
14 Sobic.005G011900 - -
15 Sobic.003G143000 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
16 Sobic.001G246900 MBTB45 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.005G203700 - -
18 Sobic.003G430500 OsCML23 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
19 Sobic.001G414300 - -
20 Sobic.001G162233 - -


Gene co-expression network
sample Sobic010G053200 Sobic010G053200 Sobic004G159500 Sobic004G159500 Sobic010G053200--Sobic004G159500 Sobic001G539300 Sobic001G539300 Sobic010G053200--Sobic001G539300 Sobic004G292600 Sobic004G292600 Sobic010G053200--Sobic004G292600 Sobic010G156400 Sobic010G156400 Sobic010G053200--Sobic010G156400 Sobic004G159500--Sobic010G053200 Sobic001G414300 Sobic001G414300 Sobic004G159500--Sobic001G414300 Sobic008G184700 Sobic008G184700 Sobic004G159500--Sobic008G184700 Sobic003G143000 Sobic003G143000 Sobic004G159500--Sobic003G143000 Sobic002G391800 Sobic002G391800 Sobic004G159500--Sobic002G391800 Sobic001G232700 Sobic001G232700 Sobic004G159500--Sobic001G232700 Sobic007G054900 Sobic007G054900 Sobic004G159500--Sobic007G054900 Sobic004G159500--Sobic001G539300 Sobic001G539300--Sobic001G539300 Sobic001G539300--Sobic010G156400 Sobic009G178550 Sobic009G178550 Sobic001G539300--Sobic009G178550 Sobic001G539300--Sobic008G184700 Sobic001G539300--Sobic004G292600 Sobic004G292600--Sobic001G539300 Sobic001G162233 Sobic001G162233 Sobic004G292600--Sobic001G162233 Sobic004G292600--Sobic010G156400 Sobic005G011900 Sobic005G011900 Sobic004G292600--Sobic005G011900 Sobic010G156400--Sobic001G539300 Sobic001G246900 Sobic001G246900 Sobic010G156400--Sobic001G246900 Sobic010G156400--Sobic009G178550 Sobic010G156400--Sobic008G184700
Octagon: transcription factors


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