Gene annotation
Transcriptome id Sobic.010G068100.1
Synonym Sb10g005930
Functional annotation RING-H2 finger protein, putative, expressed
UniProt C5Z5V3
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF149
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G30400 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g08820.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a049733 , Zm00025a030703
Brachypodium KQJ98490 , PNT68208 , PNT68209 , PNT68206 , PNT68207 , KQK19213
Barley HORVU7Hr1G031290.2 , HORVU7Hr1G031290.3
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G256400 glycosyltransferase protein, putative, expressed -
2 Sobic.007G020700 ACT domain containing protein, expressed -
3 Sobic.002G029600 CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
4 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1
5 Sobic.001G506600 exostosin family domain containing protein, expressed -
6 Sobic.006G009700 expressed protein -
7 Sobic.002G019100 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
8 Sobic.001G506700 exostosin family domain containing protein, expressed -
9 Sobic.006G108300 expressed protein -
10 Sobic.005G065700 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
11 Sobic.004G271500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
12 Sobic.004G312500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@nitrate reductase, putative, expressed K10534: nitrate reductase (NAD(P)H)
13 Sobic.002G197000 cytochrome P450 72A1, putative, expressed K10717: cytokinin trans-hydroxylase
14 Sobic.002G238700 - -
15 Sobic.008G055700 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G138700 MLA12, putative, expressed -
18 Sobic.008G084900 D-mannose binding lectin family protein, expressed -
19 Sobic.005G066500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
20 Sobic.001G274400 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -


Gene co-expression network
sample Sobic010G068100 Sobic010G068100 Sobic010G256400 Sobic010G256400 Sobic010G068100--Sobic010G256400 Sobic007G020700 Sobic007G020700 Sobic010G068100--Sobic007G020700 Sobic002G029600 Sobic002G029600 Sobic010G068100--Sobic002G029600 Sobic005G071900 Sobic005G071900 Sobic010G068100--Sobic005G071900 Sobic001G506600 Sobic001G506600 Sobic010G068100--Sobic001G506600 Sobic006G009700 Sobic006G009700 Sobic010G068100--Sobic006G009700 Sobic002G019100 Sobic002G019100 Sobic010G068100--Sobic002G019100 Sobic001G506700 Sobic001G506700 Sobic010G068100--Sobic001G506700 Sobic006G108300 Sobic006G108300 Sobic010G068100--Sobic006G108300 Sobic004G126500 Sobic004G126500 Sobic010G256400--Sobic004G126500 Sobic005G104200 Sobic005G104200 Sobic010G256400--Sobic005G104200 Sobic010G256400--Sobic002G019100 Sobic003G141200 Sobic003G141200 Sobic010G256400--Sobic003G141200 Sobic001G238500 Sobic001G238500 Sobic010G256400--Sobic001G238500 Sobic001G348800 Sobic001G348800 Sobic010G256400--Sobic001G348800 Sobic010G256400--Sobic006G009700 Sobic003G094700 Sobic003G094700 Sobic010G256400--Sobic003G094700 Sobic001G173700 Sobic001G173700 Sobic010G256400--Sobic001G173700 Sobic007G020700--Sobic002G029600 Sobic007G020700--Sobic005G071900 Sobic007G020700--Sobic006G009700 Sobic004G312500 Sobic004G312500 Sobic007G020700--Sobic004G312500 Sobic009G060700 Sobic009G060700 Sobic007G020700--Sobic009G060700 Sobic007G020700--Sobic002G019100 Sobic007G020700--Sobic006G108300 Sobic009G079900 Sobic009G079900 Sobic007G020700--Sobic009G079900 Sobic003G079100 Sobic003G079100 Sobic007G020700--Sobic003G079100 Sobic002G029600--Sobic003G079100 Sobic006G031100 Sobic006G031100 Sobic002G029600--Sobic006G031100 Sobic003G215300 Sobic003G215300 Sobic002G029600--Sobic003G215300 Sobic004G014600 Sobic004G014600 Sobic002G029600--Sobic004G014600 Sobic005G065700 Sobic005G065700 Sobic002G029600--Sobic005G065700 Sobic010G152500 Sobic010G152500 Sobic002G029600--Sobic010G152500 Sobic002G029600--Sobic005G071900 Sobic007G090600 Sobic007G090600 Sobic002G029600--Sobic007G090600 Sobic002G029600--Sobic001G506600 Sobic005G071900--Sobic005G065700 Sobic005G071900--Sobic004G312500 Sobic005G066500 Sobic005G066500 Sobic005G071900--Sobic005G066500 Sobic005G110511 Sobic005G110511 Sobic005G071900--Sobic005G110511 Sobic005G071900--Sobic006G108300 Sobic005G071900--Sobic006G009700 Sobic008G138700 Sobic008G138700 Sobic005G071900--Sobic008G138700 Sobic005G071900--Sobic003G079100 Sobic005G071900--Sobic002G029600 Sobic010G096700 Sobic010G096700 Sobic001G506600--Sobic010G096700 Sobic001G503000 Sobic001G503000 Sobic001G506600--Sobic001G503000 Sobic001G506600--Sobic005G104200 Sobic001G506600--Sobic002G029600 Sobic002G411000 Sobic002G411000 Sobic001G506600--Sobic002G411000 Sobic001G506600--Sobic002G019100 Sobic004G322000 Sobic004G322000 Sobic001G506600--Sobic004G322000 Sobic006G209000 Sobic006G209000 Sobic001G506600--Sobic006G209000 Sobic001G506600--Sobic003G215300 Sobic006G009700--Sobic008G138700 Sobic006G009700--Sobic004G312500 Sobic006G009700--Sobic005G071900 Sobic006G009700--Sobic002G019100 Sobic006G009700--Sobic004G126500 Sobic006G009700--Sobic001G238500 Sobic006G009700--Sobic005G066500 Sobic002G238700 Sobic002G238700 Sobic006G009700--Sobic002G238700 Sobic006G009700--Sobic006G108300 Sobic002G019100--Sobic006G009700 Sobic002G019100--Sobic005G104200 Sobic002G019100--Sobic009G060700 Sobic002G019100--Sobic006G108300 Sobic002G019100--Sobic008G138700 Sobic008G084900 Sobic008G084900 Sobic002G019100--Sobic008G084900 Sobic002G019100--Sobic001G506600 Sobic002G019100--Sobic001G506700 Sobic002G019100--Sobic002G029600 Sobic001G506700--Sobic002G411000 Sobic001G506700--Sobic005G065700 Sobic001G506700--Sobic002G019100 Sobic001G506700--Sobic005G071900 Sobic001G506700--Sobic001G506600 Sobic001G506700--Sobic006G209000 Sobic001G506700--Sobic006G009700 Sobic005G066300 Sobic005G066300 Sobic001G506700--Sobic005G066300 Sobic001G506700--Sobic001G503000 Sobic006G108300--Sobic004G312500 Sobic006G108300--Sobic005G071900 Sobic007G154100 Sobic007G154100 Sobic006G108300--Sobic007G154100 Sobic006G108300--Sobic002G411000 Sobic006G108300--Sobic006G009700 Sobic006G108300--Sobic003G079100 Sobic006G108300--Sobic006G209000 Sobic006G108300--Sobic002G029600 Sobic006G108300--Sobic002G019100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.