Gene annotation
Transcriptome id Sobic.010G221500.1,Sobic.010G221500.2
Synonym Sb10g026690, CAL1, AGL10, CAL
Functional annotation OsMADS30 - MADS-box family gene with MIKCc type-box, expressed
UniProt A0A194YKQ0 , A0A194YKS7
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF203
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G26310 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os06g45650.1 : OsMADS30 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a049493 , Zm00025a031749 , Zm00025a041962
Brachypodium KQK13150 , KQJ97593 , KQJ97594 , KQK23920 , PNT76212
Barley HORVU2Hr1G063800.11 , HORVU2Hr1G063800.10 , HORVU7Hr1G036130.23 , HORVU7Hr1G036130.22 , HORVU7Hr1G036130.21 , HORVU7Hr1G036130.20 , HORVU7Hr1G036130.27 , HORVU7Hr1G036130.26 , HORVU7Hr1G036130.25 , HORVU7Hr1G036130.24 , HORVU1Hr1G051660.9 , HORVU1Hr1G051660.8 , HORVU2Hr1G063800.9 , HORVU2Hr1G063800.8 , HORVU2Hr1G063800.7 , HORVU2Hr1G063800.6 , HORVU2Hr1G063800.5 , HORVU2Hr1G063800.4 , HORVU2Hr1G063800.2 , HORVU2Hr1G063800.3 , HORVU2Hr1G063800.1 , HORVU7Hr1G036130.1 , HORVU7Hr1G036130.8 , HORVU7Hr1G036130.9 , HORVU1Hr1G051660.5 , HORVU1Hr1G051660.4 , HORVU1Hr1G051660.7 , HORVU1Hr1G051660.1 , HORVU1Hr1G051660.3 , HORVU1Hr1G051660.2 , HORVU1Hr1G051660.10 , HORVU1Hr1G051660.12 , HORVU1Hr1G051660.11
Wheat TraesCS7A02G111800 , TraesCS1D02G203300 , TraesCS1D02G203300 , TraesCS2B02G281000 , TraesCS7A02G175200 , TraesCS7A02G175200 , TraesCS2D02G262700 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS7D02G176700 , TraesCS2B02G200800 , TraesCS1D02G203400 , TraesCS2A02G261200 , TraesCS2A02G261200 , TraesCS7B02G080300 , TraesCS7B02G080300 , TraesCS7A02G111900 , TraesCS1B02G214500 , TraesCS5A02G391700 , TraesCS5A02G391700 , TraesCS5A02G515500 , TraesCS4D02G341700 , TraesCS5B02G396600 , TraesCS5B02G396600 , TraesCS4B02G346700 , TraesCS2A02G174300 , TraesCS2D02G181400 , TraesCS6A02G011700 , TraesCS6A02G011700 , TraesCS1A02G199900 , TraesCS1A02G199600 , TraesCS1A02G199600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G147700 - -
2 Sobic.005G148700 - -
3 Sobic.007G109000 response regulator receiver domain containing protein, expressed K14492: two-component response regulator ARR-A family
4 Sobic.005G082400 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.009G039000 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
6 Sobic.006G276401 - -
7 Sobic.004G017700 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
8 Sobic.010G233500 vignain precursor, putative, expressed -
9 Sobic.005G221200 - -
10 Sobic.005G141500 - -
11 Sobic.004G167900 pectinesterase inhibitor domain containing protein, putative, expressed -
12 Sobic.008G045700 PHD-finger family protein, expressed -
13 Sobic.001G323500 expressed protein -
14 Sobic.005G174700 DEFL74 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.009G039700 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
16 Sobic.002G089600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DEF8 - Defensin and Defensin-like DEFL family, expressed -
17 Sobic.007G047000 hypothetical protein -
18 Sobic.005G174600 - -
19 Sobic.004G198550 - -
20 Sobic.002G212400 zinc finger, C3HC4 type family protein, expressed -


Gene co-expression network
sample Sobic010G221500 Sobic010G221500 Sobic005G147700 Sobic005G147700 Sobic010G221500--Sobic005G147700 Sobic005G148700 Sobic005G148700 Sobic010G221500--Sobic005G148700 Sobic007G109000 Sobic007G109000 Sobic010G221500--Sobic007G109000 Sobic005G082400 Sobic005G082400 Sobic010G221500--Sobic005G082400 Sobic009G039000 Sobic009G039000 Sobic010G221500--Sobic009G039000 Sobic006G276401 Sobic006G276401 Sobic010G221500--Sobic006G276401 Sobic004G017700 Sobic004G017700 Sobic010G221500--Sobic004G017700 Sobic010G233500 Sobic010G233500 Sobic010G221500--Sobic010G233500 Sobic005G221200 Sobic005G221200 Sobic010G221500--Sobic005G221200 Sobic005G147700--Sobic006G276401 Sobic005G174700 Sobic005G174700 Sobic005G147700--Sobic005G174700 Sobic004G198550 Sobic004G198550 Sobic005G147700--Sobic004G198550 Sobic005G147700--Sobic005G148700 Sobic002G089600 Sobic002G089600 Sobic005G147700--Sobic002G089600 Sobic009G039700 Sobic009G039700 Sobic005G147700--Sobic009G039700 Sobic005G147700--Sobic005G082400 Sobic005G146200 Sobic005G146200 Sobic005G147700--Sobic005G146200 Sobic005G147700--Sobic005G221200 Sobic005G148700--Sobic006G276401 Sobic005G148700--Sobic005G221200 Sobic005G148700--Sobic009G039700 Sobic005G141500 Sobic005G141500 Sobic005G148700--Sobic005G141500 Sobic001G323500 Sobic001G323500 Sobic005G148700--Sobic001G323500 Sobic005G174600 Sobic005G174600 Sobic005G148700--Sobic005G174600 Sobic005G109900 Sobic005G109900 Sobic005G148700--Sobic005G109900 Sobic005G148700--Sobic005G147700 Sobic005G148700--Sobic004G017700 Sobic007G109000--Sobic009G039000 Sobic005G074700 Sobic005G074700 Sobic007G109000--Sobic005G074700 Sobic010G119100 Sobic010G119100 Sobic007G109000--Sobic010G119100 Sobic007G109000--Sobic004G017700 Sobic007G047000 Sobic007G047000 Sobic007G109000--Sobic007G047000 Sobic005G152932 Sobic005G152932 Sobic007G109000--Sobic005G152932 Sobic007G109000--Sobic005G148700 Sobic007G109000--Sobic005G082400 Sobic007G109000--Sobic006G276401 Sobic007G040500 Sobic007G040500 Sobic005G082400--Sobic007G040500 Sobic004G048400 Sobic004G048400 Sobic005G082400--Sobic004G048400 Sobic005G133100 Sobic005G133100 Sobic005G082400--Sobic005G133100 Sobic001G438300 Sobic001G438300 Sobic005G082400--Sobic001G438300 Sobic005G082400--Sobic006G276401 Sobic001G183300 Sobic001G183300 Sobic005G082400--Sobic001G183300 Sobic005G082400--Sobic001G323500 Sobic005G082400--Sobic009G039000 Sobic008G045700 Sobic008G045700 Sobic005G082400--Sobic008G045700 Sobic009G039000--Sobic007G047000 Sobic009G039000--Sobic004G017700 Sobic009G039000--Sobic007G109000 Sobic009G039000--Sobic005G082400 Sobic009G039000--Sobic005G133100 Sobic009G039000--Sobic005G074700 Sobic009G039000--Sobic005G147700 Sobic009G039000--Sobic007G040500 Sobic009G039000--Sobic006G276401 Sobic006G276401--Sobic005G147700 Sobic006G276401--Sobic005G148700 Sobic006G276401--Sobic001G323500 Sobic006G276401--Sobic005G221200 Sobic006G276401--Sobic005G141500 Sobic006G276401--Sobic009G039700 Sobic006G276401--Sobic005G174700 Sobic006G276401--Sobic005G082400 Sobic006G276401--Sobic005G109900 Sobic004G017700--Sobic009G039000 Sobic004G017700--Sobic005G148700 Sobic004G017700--Sobic007G109000 Sobic004G017700--Sobic005G147700 Sobic004G017700--Sobic006G276401 Sobic004G017700--Sobic005G074700 Sobic004G017700--Sobic007G047000 Sobic004G017700--Sobic005G221200 Sobic004G017700--Sobic005G082400 Sobic010G233500--Sobic008G045700 Sobic007G066566 Sobic007G066566 Sobic010G233500--Sobic007G066566 Sobic009G210700 Sobic009G210700 Sobic010G233500--Sobic009G210700 Sobic006G139400 Sobic006G139400 Sobic010G233500--Sobic006G139400 Sobic003G238900 Sobic003G238900 Sobic010G233500--Sobic003G238900 Sobic008G184400 Sobic008G184400 Sobic010G233500--Sobic008G184400 Sobic010G233500--Sobic001G323500 Sobic010G233500--Sobic001G438300 Sobic010G233500--Sobic005G148700 Sobic005G221200--Sobic005G141500 Sobic005G221200--Sobic005G174600 Sobic005G221200--Sobic005G109900 Sobic005G221200--Sobic009G039700 Sobic005G221200--Sobic005G148700 Sobic003G135201 Sobic003G135201 Sobic005G221200--Sobic003G135201 Sobic009G006800 Sobic009G006800 Sobic005G221200--Sobic009G006800 Sobic005G221200--Sobic006G276401 Sobic005G109800 Sobic005G109800 Sobic005G221200--Sobic005G109800
Octagon: transcription factors


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