Gene annotation
Transcriptome id Sobic.001G155100.1
Synonym Sb01g013500, CNGC6, ATCNGC6
Functional annotation cyclic nucleotide-gated ion channel, putative, expressed
UniProt A0A1Z5S5R5
Pfam PF00520
Panther DB PTHR10217 PTHR10217:SF489
NCBI CDD -
KEGG Orthology K05391; cyclic nucleotide gated channel, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT4G30560 : cyclic nucleotide gated channel 9
RAP-DB (Rice) LOC_Os03g44440.1 : cyclic nucleotide-gated ion channel, putative, expressed
MaizeGDB (Corn) Zm00025a017251 , Zm00025a025154 , Zm00025a021090
Brachypodium KQK13981
Barley HORVU1Hr1G018730.1 , HORVU5Hr1G092890.3 , HORVU5Hr1G092890.2 , HORVU5Hr1G092890.1
Wheat TraesCS6A02G222600 , TraesCS6A02G222600 , TraesCS6A02G212000 , TraesCS6B02G242900 , TraesCS6D02G212600 , TraesCS6D02G212600 , TraesCS6B02G258700 , TraesCS6B02G258700 , TraesCS5D02G383700 , TraesCS5A02G374200 , TraesCS5B02G376100 , TraesCS6D02G195600
Populus -


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cDNA sequences
Sobic.001G155100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G220680 - -
2 Sobic.007G195000 cystathionin beta synthase protein, putative, expressed -
3 Sobic.003G343300 - -
4 Sobic.004G168150 - -
5 Sobic.006G062100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
6 Sobic.001G188100 expressed protein K15191: La-related protein 7
7 Sobic.003G243300 expressed protein -
8 Sobic.003G208900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed -
9 Sobic.004G160000 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
10 Sobic.001G037066 - -
11 Sobic.003G305500 expressed protein -
12 Sobic.005G039000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
13 Sobic.007G139300 exostosin family domain containing protein, expressed -
14 Sobic.001G366700 villin protein, putative, expressed -
15 Sobic.004G327000 STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
16 Sobic.010G229801 - -
17 Sobic.008G134600 - -
18 Sobic.006G059100 POEI20 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
19 Sobic.008G124301 - -
20 Sobic.006G282100 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G155100 Sobic001G155100 Sobic005G220680 Sobic005G220680 Sobic001G155100--Sobic005G220680 Sobic007G195000 Sobic007G195000 Sobic001G155100--Sobic007G195000 Sobic003G343300 Sobic003G343300 Sobic001G155100--Sobic003G343300 Sobic004G168150 Sobic004G168150 Sobic001G155100--Sobic004G168150 Sobic006G062100 Sobic006G062100 Sobic001G155100--Sobic006G062100 Sobic001G188100 Sobic001G188100 Sobic001G155100--Sobic001G188100 Sobic003G243300 Sobic003G243300 Sobic001G155100--Sobic003G243300 Sobic003G208900 Sobic003G208900 Sobic001G155100--Sobic003G208900 Sobic004G160000 Sobic004G160000 Sobic001G155100--Sobic004G160000 Sobic005G220680--Sobic001G155100 Sobic007G145500 Sobic007G145500 Sobic005G220680--Sobic007G145500 Sobic005G220680--Sobic001G188100 Sobic006G282100 Sobic006G282100 Sobic005G220680--Sobic006G282100 Sobic004G062300 Sobic004G062300 Sobic005G220680--Sobic004G062300 Sobic010G177200 Sobic010G177200 Sobic005G220680--Sobic010G177200 Sobic005G220680--Sobic007G195000 Sobic010G216100 Sobic010G216100 Sobic005G220680--Sobic010G216100 Sobic001G287400 Sobic001G287400 Sobic005G220680--Sobic001G287400 Sobic007G195000--Sobic003G343300 Sobic007G195000--Sobic006G062100 Sobic003G160600 Sobic003G160600 Sobic007G195000--Sobic003G160600 Sobic005G039000 Sobic005G039000 Sobic007G195000--Sobic005G039000 Sobic003G343000 Sobic003G343000 Sobic007G195000--Sobic003G343000 Sobic003G305500 Sobic003G305500 Sobic007G195000--Sobic003G305500 Sobic004G327000 Sobic004G327000 Sobic007G195000--Sobic004G327000 Sobic007G139300 Sobic007G139300 Sobic007G195000--Sobic007G139300 Sobic008G134600 Sobic008G134600 Sobic007G195000--Sobic008G134600 Sobic003G343300--Sobic007G195000 Sobic003G343300--Sobic006G062100 Sobic003G343300--Sobic003G343000 Sobic003G343300--Sobic008G134600 Sobic003G343300--Sobic007G139300 Sobic003G343300--Sobic003G305500 Sobic008G124301 Sobic008G124301 Sobic003G343300--Sobic008G124301 Sobic001G392650 Sobic001G392650 Sobic003G343300--Sobic001G392650 Sobic003G343300--Sobic003G160600 Sobic010G157900 Sobic010G157900 Sobic004G168150--Sobic010G157900 Sobic004G168150--Sobic003G208900 Sobic004G168150--Sobic001G155100 Sobic004G168150--Sobic007G195000 Sobic004G168150--Sobic003G343300 Sobic002G223650 Sobic002G223650 Sobic004G168150--Sobic002G223650 Sobic003G274100 Sobic003G274100 Sobic004G168150--Sobic003G274100 Sobic004G168150--Sobic005G039000 Sobic004G168150--Sobic003G305500 Sobic001G037066 Sobic001G037066 Sobic006G062100--Sobic001G037066 Sobic009G260900 Sobic009G260900 Sobic006G062100--Sobic009G260900 Sobic006G062100--Sobic003G343300 Sobic006G176200 Sobic006G176200 Sobic006G062100--Sobic006G176200 Sobic006G062100--Sobic007G139300 Sobic009G216400 Sobic009G216400 Sobic006G062100--Sobic009G216400 Sobic003G127200 Sobic003G127200 Sobic006G062100--Sobic003G127200 Sobic007G100800 Sobic007G100800 Sobic006G062100--Sobic007G100800 Sobic002G351500 Sobic002G351500 Sobic006G062100--Sobic002G351500 Sobic004G036400 Sobic004G036400 Sobic001G188100--Sobic004G036400 Sobic002G049700 Sobic002G049700 Sobic001G188100--Sobic002G049700 Sobic001G409000 Sobic001G409000 Sobic001G188100--Sobic001G409000 Sobic006G164800 Sobic006G164800 Sobic001G188100--Sobic006G164800 Sobic007G001800 Sobic007G001800 Sobic001G188100--Sobic007G001800 Sobic009G060000 Sobic009G060000 Sobic001G188100--Sobic009G060000 Sobic003G445600 Sobic003G445600 Sobic001G188100--Sobic003G445600 Sobic001G188100--Sobic004G062300 Sobic001G188100--Sobic008G134600 Sobic001G366700 Sobic001G366700 Sobic003G243300--Sobic001G366700 Sobic001G529800 Sobic001G529800 Sobic003G243300--Sobic001G529800 Sobic003G243300--Sobic007G139300 Sobic003G243300--Sobic001G037066 Sobic003G313200 Sobic003G313200 Sobic003G243300--Sobic003G313200 Sobic004G099200 Sobic004G099200 Sobic003G243300--Sobic004G099200 Sobic001G525600 Sobic001G525600 Sobic003G243300--Sobic001G525600 Sobic003G243300--Sobic006G062100 Sobic004G071900 Sobic004G071900 Sobic003G243300--Sobic004G071900 Sobic003G208900--Sobic003G305500 Sobic003G208900--Sobic005G039000 Sobic003G208900--Sobic003G343300 Sobic003G208900--Sobic003G343000 Sobic003G208900--Sobic007G195000 Sobic007G185801 Sobic007G185801 Sobic003G208900--Sobic007G185801 Sobic004G042800 Sobic004G042800 Sobic003G208900--Sobic004G042800 Sobic003G208900--Sobic007G139300 Sobic003G208900--Sobic006G062100 Sobic004G160000--Sobic004G327000 Sobic004G160000--Sobic001G188100 Sobic010G026200 Sobic010G026200 Sobic004G160000--Sobic010G026200 Sobic006G018701 Sobic006G018701 Sobic004G160000--Sobic006G018701 Sobic004G160000--Sobic003G343300 Sobic004G160000--Sobic007G195000 Sobic004G160000--Sobic002G049700 Sobic004G160000--Sobic003G160600 Sobic009G158300 Sobic009G158300 Sobic004G160000--Sobic009G158300
Octagon: transcription factors


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