Gene annotation
Transcriptome id Sobic.001G366700.1
Synonym Sb01g034950, VLN2, ATVLN2
Functional annotation villin protein, putative, expressed
UniProt C5WZN4
Pfam PF02209 PF00626
Panther DB PTHR11977 PTHR11977:SF40
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007010; cytoskeleton organization GO:0003779actin binding


Orthologs (automatic annotation)
TAIR AT2G41740 : villin 2
RAP-DB (Rice) LOC_Os03g24220.2 : villin protein, putative, expressed
MaizeGDB (Corn) Zm00025a002543 , Zm00025a025979 , Zm00025a052336
Brachypodium PNT77391 , PNT77392 , PNT77393 , PNT77394
Barley HORVU3Hr1G108110.3 , HORVU4Hr1G049770.3 , HORVU4Hr1G049770.2 , HORVU4Hr1G049770.1 , HORVU4Hr1G049770.7 , HORVU4Hr1G049770.6 , HORVU4Hr1G049770.5 , HORVU4Hr1G049770.13 , HORVU4Hr1G049770.12 , HORVU4Hr1G049770.11 , HORVU4Hr1G049770.10 , HORVU4Hr1G049770.16 , HORVU4Hr1G049770.15 , HORVU4Hr1G049770.14 , HORVU4Hr1G049770.19 , HORVU3Hr1G108110.8 , HORVU3Hr1G108110.9 , HORVU3Hr1G108110.1 , HORVU3Hr1G108110.2 , HORVU3Hr1G108110.4 , HORVU3Hr1G108110.5 , HORVU3Hr1G108110.6 , HORVU3Hr1G108110.7 , HORVU3Hr1G108110.29 , HORVU3Hr1G108110.28 , HORVU3Hr1G108110.23 , HORVU3Hr1G108110.22 , HORVU3Hr1G108110.21 , HORVU3Hr1G108110.20 , HORVU3Hr1G108110.27 , HORVU3Hr1G108110.26 , HORVU3Hr1G108110.25 , HORVU3Hr1G108110.24 , HORVU4Hr1G049770.28 , HORVU4Hr1G049770.22 , HORVU4Hr1G049770.23 , HORVU4Hr1G049770.20 , HORVU4Hr1G049770.21 , HORVU4Hr1G049770.26 , HORVU4Hr1G049770.27 , HORVU4Hr1G049770.24 , HORVU4Hr1G049770.25 , HORVU3Hr1G108110.30 , HORVU3Hr1G108110.31 , HORVU3Hr1G108110.32 , HORVU3Hr1G108110.33 , HORVU4Hr1G049770.4 , HORVU3Hr1G108110.12 , HORVU3Hr1G108110.13 , HORVU3Hr1G108110.10 , HORVU3Hr1G108110.11 , HORVU3Hr1G108110.16 , HORVU3Hr1G108110.17 , HORVU3Hr1G108110.14 , HORVU3Hr1G108110.15 , HORVU3Hr1G108110.18 , HORVU3Hr1G108110.19
Wheat TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS3B02G546200 , TraesCS4D02G163700 , TraesCS4D02G163700 , TraesCS3D02G492600 , TraesCS3D02G492600 , TraesCS3D02G492600 , TraesCS4A02G156700 , TraesCS4A02G156700 , TraesCS4A02G156700 , TraesCS4B02G152700
Populus -


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cDNA sequences
Sobic.001G366700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G139300 exostosin family domain containing protein, expressed -
2 Sobic.003G243300 expressed protein -
3 Sobic.002G279900 beta-galactosidase precursor, putative, expressed -
4 Sobic.003G313200 expressed protein -
5 Sobic.004G099200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
6 Sobic.001G529800 phospholipase D, putative, expressed K01115: phospholipase D1/2
7 Sobic.009G158400 - -
8 Sobic.001G037066 - -
9 Sobic.006G062100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
10 Sobic.002G049700 potassium channel AKT1, putative, expressed -
11 Sobic.001G525600 fringe-related protein, putative, expressed -
12 Sobic.004G071900 expressed protein -
13 Sobic.006G215500 OsFBX114 - F-box domain containing protein, expressed -
14 Sobic.001G135950 - -
15 Sobic.006G022700 OsFBD9 - F-box and FBD domain containing protein, expressed -
16 Sobic.001G392650 - -
17 Sobic.002G125100 - -
18 Sobic.009G105100 expressed protein -
19 Sobic.001G220800 AGC_AGC_other_NDRh_TRCd.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
20 Sobic.006G059100 POEI20 - Pollen Ole e I allergen and extensin family protein precursor, expressed -


Gene co-expression network
sample Sobic001G366700 Sobic001G366700 Sobic007G139300 Sobic007G139300 Sobic001G366700--Sobic007G139300 Sobic003G243300 Sobic003G243300 Sobic001G366700--Sobic003G243300 Sobic002G279900 Sobic002G279900 Sobic001G366700--Sobic002G279900 Sobic003G313200 Sobic003G313200 Sobic001G366700--Sobic003G313200 Sobic004G099200 Sobic004G099200 Sobic001G366700--Sobic004G099200 Sobic001G529800 Sobic001G529800 Sobic001G366700--Sobic001G529800 Sobic009G158400 Sobic009G158400 Sobic001G366700--Sobic009G158400 Sobic001G037066 Sobic001G037066 Sobic001G366700--Sobic001G037066 Sobic006G062100 Sobic006G062100 Sobic001G366700--Sobic006G062100 Sobic003G405800 Sobic003G405800 Sobic007G139300--Sobic003G405800 Sobic007G139300--Sobic006G062100 Sobic006G176200 Sobic006G176200 Sobic007G139300--Sobic006G176200 Sobic007G139300--Sobic001G366700 Sobic007G139300--Sobic001G529800 Sobic009G087200 Sobic009G087200 Sobic007G139300--Sobic009G087200 Sobic001G220800 Sobic001G220800 Sobic007G139300--Sobic001G220800 Sobic007G139300--Sobic003G313200 Sobic007G139300--Sobic009G158400 Sobic003G243300--Sobic001G366700 Sobic003G243300--Sobic001G529800 Sobic003G243300--Sobic007G139300 Sobic003G243300--Sobic001G037066 Sobic003G243300--Sobic003G313200 Sobic003G243300--Sobic004G099200 Sobic001G525600 Sobic001G525600 Sobic003G243300--Sobic001G525600 Sobic003G243300--Sobic006G062100 Sobic004G071900 Sobic004G071900 Sobic003G243300--Sobic004G071900 Sobic001G135950 Sobic001G135950 Sobic002G279900--Sobic001G135950 Sobic002G125100 Sobic002G125100 Sobic002G279900--Sobic002G125100 Sobic002G279900--Sobic004G071900 Sobic006G215500 Sobic006G215500 Sobic002G279900--Sobic006G215500 Sobic010G001200 Sobic010G001200 Sobic002G279900--Sobic010G001200 Sobic002G279900--Sobic004G099200 Sobic002G279900--Sobic001G525600 Sobic002G279900--Sobic003G313200 Sobic006G022700 Sobic006G022700 Sobic002G279900--Sobic006G022700 Sobic003G313200--Sobic006G215500 Sobic003G313200--Sobic004G071900 Sobic003G313200--Sobic004G099200 Sobic003G313200--Sobic001G135950 Sobic003G313200--Sobic001G525600 Sobic003G313200--Sobic006G022700 Sobic003G313200--Sobic002G279900 Sobic003G313200--Sobic002G125100 Sobic009G105100 Sobic009G105100 Sobic003G313200--Sobic009G105100 Sobic004G099200--Sobic001G135950 Sobic004G099200--Sobic001G525600 Sobic004G099200--Sobic004G071900 Sobic005G145400 Sobic005G145400 Sobic004G099200--Sobic005G145400 Sobic004G099200--Sobic002G125100 Sobic004G099200--Sobic006G215500 Sobic004G099200--Sobic003G313200 Sobic010G276100 Sobic010G276100 Sobic004G099200--Sobic010G276100 Sobic004G099200--Sobic002G279900 Sobic001G529800--Sobic001G525600 Sobic001G529800--Sobic003G313200 Sobic001G529800--Sobic006G022700 Sobic001G529800--Sobic002G279900 Sobic001G529800--Sobic006G215500 Sobic001G529800--Sobic004G099200 Sobic001G529800--Sobic004G071900 Sobic001G529800--Sobic001G135950 Sobic001G529800--Sobic002G125100 Sobic009G102700 Sobic009G102700 Sobic009G158400--Sobic009G102700 Sobic004G166100 Sobic004G166100 Sobic009G158400--Sobic004G166100 Sobic009G260900 Sobic009G260900 Sobic009G158400--Sobic009G260900 Sobic001G528700 Sobic001G528700 Sobic009G158400--Sobic001G528700 Sobic004G025500 Sobic004G025500 Sobic009G158400--Sobic004G025500 Sobic003G127200 Sobic003G127200 Sobic009G158400--Sobic003G127200 Sobic004G024000 Sobic004G024000 Sobic009G158400--Sobic004G024000 Sobic007G175800 Sobic007G175800 Sobic009G158400--Sobic007G175800 Sobic009G158400--Sobic004G071900 Sobic004G303700 Sobic004G303700 Sobic001G037066--Sobic004G303700 Sobic001G037066--Sobic003G127200 Sobic007G100800 Sobic007G100800 Sobic001G037066--Sobic007G100800 Sobic001G037066--Sobic009G260900 Sobic002G002600 Sobic002G002600 Sobic001G037066--Sobic002G002600 Sobic008G028300 Sobic008G028300 Sobic001G037066--Sobic008G028300 Sobic001G002200 Sobic001G002200 Sobic001G037066--Sobic001G002200 Sobic003G061700 Sobic003G061700 Sobic001G037066--Sobic003G061700 Sobic002G140500 Sobic002G140500 Sobic001G037066--Sobic002G140500 Sobic006G062100--Sobic001G037066 Sobic006G062100--Sobic009G260900 Sobic003G343300 Sobic003G343300 Sobic006G062100--Sobic003G343300 Sobic006G062100--Sobic006G176200 Sobic006G062100--Sobic007G139300 Sobic009G216400 Sobic009G216400 Sobic006G062100--Sobic009G216400 Sobic006G062100--Sobic003G127200 Sobic006G062100--Sobic007G100800 Sobic002G351500 Sobic002G351500 Sobic006G062100--Sobic002G351500
Octagon: transcription factors


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