Gene annotation
Transcriptome id Sobic.003G243300.1
Synonym AGP16, Sb03g029960, ATAGP16
Functional annotation expressed protein
UniProt C5XFB1
Pfam PF06376
Panther DB PTHR33374 PTHR33374:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46330 : arabinogalactan protein 16
RAP-DB (Rice) LOC_Os01g46850.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G243300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G366700 villin protein, putative, expressed -
2 Sobic.001G529800 phospholipase D, putative, expressed K01115: phospholipase D1/2
3 Sobic.007G139300 exostosin family domain containing protein, expressed -
4 Sobic.001G037066 - -
5 Sobic.003G313200 expressed protein -
6 Sobic.004G099200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
7 Sobic.001G525600 fringe-related protein, putative, expressed -
8 Sobic.006G062100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
9 Sobic.004G071900 expressed protein -
10 Sobic.003G178000 pectinesterase, putative, expressed -
11 Sobic.002G384500 expressed protein -
12 Sobic.006G215500 OsFBX114 - F-box domain containing protein, expressed -
13 Sobic.002G030300 - -
14 Sobic.002G279900 beta-galactosidase precursor, putative, expressed -
15 Sobic.002G197900 - -
16 Sobic.009G105100 expressed protein -
17 Sobic.009G158400 - -
18 Sobic.001G135950 - -
19 Sobic.003G317600 NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed K17871: NADH:ubiquinone reductase (non-electrogenic)
20 Sobic.007G175800 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -


Gene co-expression network
sample Sobic003G243300 Sobic003G243300 Sobic001G366700 Sobic001G366700 Sobic003G243300--Sobic001G366700 Sobic001G529800 Sobic001G529800 Sobic003G243300--Sobic001G529800 Sobic007G139300 Sobic007G139300 Sobic003G243300--Sobic007G139300 Sobic001G037066 Sobic001G037066 Sobic003G243300--Sobic001G037066 Sobic003G313200 Sobic003G313200 Sobic003G243300--Sobic003G313200 Sobic004G099200 Sobic004G099200 Sobic003G243300--Sobic004G099200 Sobic001G525600 Sobic001G525600 Sobic003G243300--Sobic001G525600 Sobic006G062100 Sobic006G062100 Sobic003G243300--Sobic006G062100 Sobic004G071900 Sobic004G071900 Sobic003G243300--Sobic004G071900 Sobic001G366700--Sobic007G139300 Sobic001G366700--Sobic003G243300 Sobic002G279900 Sobic002G279900 Sobic001G366700--Sobic002G279900 Sobic001G366700--Sobic003G313200 Sobic001G366700--Sobic004G099200 Sobic001G366700--Sobic001G529800 Sobic009G158400 Sobic009G158400 Sobic001G366700--Sobic009G158400 Sobic001G366700--Sobic001G037066 Sobic001G366700--Sobic006G062100 Sobic001G529800--Sobic001G525600 Sobic001G529800--Sobic003G313200 Sobic006G022700 Sobic006G022700 Sobic001G529800--Sobic006G022700 Sobic001G529800--Sobic002G279900 Sobic006G215500 Sobic006G215500 Sobic001G529800--Sobic006G215500 Sobic001G529800--Sobic004G099200 Sobic001G529800--Sobic004G071900 Sobic001G135950 Sobic001G135950 Sobic001G529800--Sobic001G135950 Sobic002G125100 Sobic002G125100 Sobic001G529800--Sobic002G125100 Sobic003G405800 Sobic003G405800 Sobic007G139300--Sobic003G405800 Sobic007G139300--Sobic006G062100 Sobic006G176200 Sobic006G176200 Sobic007G139300--Sobic006G176200 Sobic007G139300--Sobic001G366700 Sobic007G139300--Sobic001G529800 Sobic009G087200 Sobic009G087200 Sobic007G139300--Sobic009G087200 Sobic001G220800 Sobic001G220800 Sobic007G139300--Sobic001G220800 Sobic007G139300--Sobic003G313200 Sobic007G139300--Sobic009G158400 Sobic004G303700 Sobic004G303700 Sobic001G037066--Sobic004G303700 Sobic003G127200 Sobic003G127200 Sobic001G037066--Sobic003G127200 Sobic007G100800 Sobic007G100800 Sobic001G037066--Sobic007G100800 Sobic009G260900 Sobic009G260900 Sobic001G037066--Sobic009G260900 Sobic002G002600 Sobic002G002600 Sobic001G037066--Sobic002G002600 Sobic008G028300 Sobic008G028300 Sobic001G037066--Sobic008G028300 Sobic001G002200 Sobic001G002200 Sobic001G037066--Sobic001G002200 Sobic003G061700 Sobic003G061700 Sobic001G037066--Sobic003G061700 Sobic002G140500 Sobic002G140500 Sobic001G037066--Sobic002G140500 Sobic003G313200--Sobic006G215500 Sobic003G313200--Sobic004G071900 Sobic003G313200--Sobic004G099200 Sobic003G313200--Sobic001G135950 Sobic003G313200--Sobic001G525600 Sobic003G313200--Sobic006G022700 Sobic003G313200--Sobic002G279900 Sobic003G313200--Sobic002G125100 Sobic009G105100 Sobic009G105100 Sobic003G313200--Sobic009G105100 Sobic004G099200--Sobic001G135950 Sobic004G099200--Sobic001G525600 Sobic004G099200--Sobic004G071900 Sobic005G145400 Sobic005G145400 Sobic004G099200--Sobic005G145400 Sobic004G099200--Sobic002G125100 Sobic004G099200--Sobic006G215500 Sobic004G099200--Sobic003G313200 Sobic010G276100 Sobic010G276100 Sobic004G099200--Sobic010G276100 Sobic004G099200--Sobic002G279900 Sobic001G525600--Sobic004G099200 Sobic001G525600--Sobic001G135950 Sobic001G525600--Sobic005G145400 Sobic001G525600--Sobic003G313200 Sobic003G420500 Sobic003G420500 Sobic001G525600--Sobic003G420500 Sobic001G525600--Sobic004G071900 Sobic001G525600--Sobic002G279900 Sobic001G525600--Sobic002G125100 Sobic001G525600--Sobic006G215500 Sobic006G062100--Sobic001G037066 Sobic006G062100--Sobic009G260900 Sobic003G343300 Sobic003G343300 Sobic006G062100--Sobic003G343300 Sobic006G062100--Sobic006G176200 Sobic006G062100--Sobic007G139300 Sobic009G216400 Sobic009G216400 Sobic006G062100--Sobic009G216400 Sobic006G062100--Sobic003G127200 Sobic006G062100--Sobic007G100800 Sobic002G351500 Sobic002G351500 Sobic006G062100--Sobic002G351500 Sobic004G071900--Sobic006G215500 Sobic004G071900--Sobic001G135950 Sobic004G071900--Sobic002G125100 Sobic004G071900--Sobic004G099200 Sobic004G071900--Sobic009G105100 Sobic009G102700 Sobic009G102700 Sobic004G071900--Sobic009G102700 Sobic004G071900--Sobic003G313200 Sobic004G071900--Sobic006G022700 Sobic004G071900--Sobic002G279900
Octagon: transcription factors


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