Gene annotation
Transcriptome id Sobic.003G178000.1
Synonym Sb03g022950
Functional annotation pectinesterase, putative, expressed
UniProt C5XM76
Pfam PF01095
Panther DB PTHR31321 PTHR31321:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT3G17060 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os03g19610.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a028890
Brachypodium KQK21980
Barley HORVU3Hr1G115650.1 , HORVU3Hr1G115650.2
Wheat TraesCS3B02G598100 , TraesCS3A02G529100 , TraesCS3D02G534400
Populus -


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cDNA sequences
Sobic.003G178000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G351500 pollen allergen Cyn d 23, putative, expressed -
2 Sobic.003G061700 - -
3 Sobic.008G186900 SCP-like extracellular protein, expressed -
4 Sobic.007G100800 CSLD3 - cellulose synthase-like family D, expressed -
5 Sobic.003G127200 phosphatidylinositol kinase, putative, expressed -
6 Sobic.004G294200 ZOS2-13 - C2H2 zinc finger protein, expressed -
7 Sobic.003G164700 C2 domain containing protein, putative, expressed -
8 Sobic.009G216400 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
9 Sobic.009G177300 monocopper oxidase, putative, expressed -
10 Sobic.001G228000 universal stress protein domain containing protein, putative, expressed -
11 Sobic.010G161400 polygalacturonase, putative, expressed K01213: galacturan 1,4-alpha-galacturonidase
12 Sobic.008G028300 pollen allergen, putative, expressed -
13 Sobic.002G197900 - -
14 Sobic.001G002200 myosin, putative, expressed K10357: myosin V
15 Sobic.002G002600 la domain containing protein, expressed -
16 Sobic.005G010000 expressed protein -
17 Sobic.003G438500 THION25 - Plant thionin family protein precursor, expressed -
18 Sobic.003G173800 polygalacturonase, putative, expressed -
19 Sobic.004G070600 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
20 Sobic.009G260900 expressed protein -


Gene co-expression network
sample Sobic003G178000 Sobic003G178000 Sobic002G351500 Sobic002G351500 Sobic003G178000--Sobic002G351500 Sobic003G061700 Sobic003G061700 Sobic003G178000--Sobic003G061700 Sobic008G186900 Sobic008G186900 Sobic003G178000--Sobic008G186900 Sobic007G100800 Sobic007G100800 Sobic003G178000--Sobic007G100800 Sobic003G127200 Sobic003G127200 Sobic003G178000--Sobic003G127200 Sobic004G294200 Sobic004G294200 Sobic003G178000--Sobic004G294200 Sobic003G164700 Sobic003G164700 Sobic003G178000--Sobic003G164700 Sobic009G216400 Sobic009G216400 Sobic003G178000--Sobic009G216400 Sobic009G177300 Sobic009G177300 Sobic003G178000--Sobic009G177300 Sobic002G351500--Sobic009G177300 Sobic002G351500--Sobic003G061700 Sobic002G351500--Sobic007G100800 Sobic002G351500--Sobic009G216400 Sobic002G351500--Sobic008G186900 Sobic002G351500--Sobic003G178000 Sobic005G010000 Sobic005G010000 Sobic002G351500--Sobic005G010000 Sobic002G351500--Sobic004G294200 Sobic003G438500 Sobic003G438500 Sobic002G351500--Sobic003G438500 Sobic003G061700--Sobic007G100800 Sobic003G061700--Sobic008G186900 Sobic003G061700--Sobic005G010000 Sobic010G161400 Sobic010G161400 Sobic003G061700--Sobic010G161400 Sobic003G173800 Sobic003G173800 Sobic003G061700--Sobic003G173800 Sobic003G061700--Sobic003G127200 Sobic002G002600 Sobic002G002600 Sobic003G061700--Sobic002G002600 Sobic003G061700--Sobic002G351500 Sobic009G098900 Sobic009G098900 Sobic003G061700--Sobic009G098900 Sobic008G186900--Sobic007G100800 Sobic008G186900--Sobic010G161400 Sobic008G186900--Sobic003G061700 Sobic008G186900--Sobic005G010000 Sobic008G186900--Sobic003G173800 Sobic008G186900--Sobic002G002600 Sobic008G186900--Sobic003G127200 Sobic008G186900--Sobic009G098900 Sobic008G028300 Sobic008G028300 Sobic008G186900--Sobic008G028300 Sobic007G100800--Sobic003G061700 Sobic007G100800--Sobic008G186900 Sobic007G100800--Sobic005G010000 Sobic007G100800--Sobic010G161400 Sobic007G100800--Sobic003G127200 Sobic007G100800--Sobic003G173800 Sobic007G100800--Sobic002G002600 Sobic007G100800--Sobic009G098900 Sobic007G100800--Sobic008G028300 Sobic003G127200--Sobic002G002600 Sobic003G127200--Sobic007G100800 Sobic003G127200--Sobic008G028300 Sobic009G260900 Sobic009G260900 Sobic003G127200--Sobic009G260900 Sobic003G127200--Sobic008G186900 Sobic003G127200--Sobic010G161400 Sobic003G127200--Sobic003G061700 Sobic001G002200 Sobic001G002200 Sobic003G127200--Sobic001G002200 Sobic001G539700 Sobic001G539700 Sobic003G127200--Sobic001G539700 Sobic004G294200--Sobic003G164700 Sobic002G197900 Sobic002G197900 Sobic004G294200--Sobic002G197900 Sobic002G066100 Sobic002G066100 Sobic004G294200--Sobic002G066100 Sobic004G294200--Sobic002G351500 Sobic004G294200--Sobic003G178000 Sobic004G294200--Sobic009G177300 Sobic001G228000 Sobic001G228000 Sobic004G294200--Sobic001G228000 Sobic008G124301 Sobic008G124301 Sobic004G294200--Sobic008G124301 Sobic006G237700 Sobic006G237700 Sobic004G294200--Sobic006G237700 Sobic003G164700--Sobic001G228000 Sobic003G164700--Sobic002G197900 Sobic003G164700--Sobic004G294200 Sobic001G240900 Sobic001G240900 Sobic003G164700--Sobic001G240900 Sobic003G164700--Sobic006G237700 Sobic008G119501 Sobic008G119501 Sobic003G164700--Sobic008G119501 Sobic003G164700--Sobic001G002200 Sobic003G317600 Sobic003G317600 Sobic003G164700--Sobic003G317600 Sobic010G229801 Sobic010G229801 Sobic003G164700--Sobic010G229801 Sobic009G216400--Sobic009G177300 Sobic009G216400--Sobic002G351500 Sobic009G216400--Sobic008G186900 Sobic009G216400--Sobic003G061700 Sobic009G216400--Sobic007G100800 Sobic009G216400--Sobic003G438500 Sobic009G216400--Sobic005G010000 Sobic009G216400--Sobic003G178000 Sobic009G216400--Sobic010G161400 Sobic009G177300--Sobic002G351500 Sobic009G177300--Sobic009G216400 Sobic006G071096 Sobic006G071096 Sobic009G177300--Sobic006G071096 Sobic009G177300--Sobic004G294200 Sobic009G177300--Sobic003G178000 Sobic009G177300--Sobic002G066100 Sobic009G177300--Sobic003G061700 Sobic009G177300--Sobic007G100800 Sobic009G177300--Sobic008G186900
Octagon: transcription factors


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