Gene annotation
Transcriptome id Sobic.001G313100.1
Synonym ATCPK6, CPK6, ATCDPK3, Sb01g030450
Functional annotation CAMK_CAMK_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C5WTL5
Pfam PF13499 PF07714
Panther DB PTHR24349 PTHR24349:SF162
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology K13412; calcium-dependent protein kinase
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G17290 : Calcium-dependent protein kinase family protein
RAP-DB (Rice) LOC_Os10g39420.1 : CAMK_CAMK_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a000391 , Zm00025a003185
Brachypodium KQJ97604
Barley HORVU4Hr1G082790.10 , HORVU4Hr1G082790.11 , HORVU4Hr1G082790.1 , HORVU4Hr1G082790.3 , HORVU4Hr1G082790.4 , HORVU4Hr1G082790.6 , HORVU4Hr1G082790.7 , HORVU4Hr1G082790.8 , HORVU4Hr1G082790.9
Wheat TraesCS4D02G318400 , TraesCS4D02G318400 , TraesCS2D02G456400 , TraesCS5A02G490200 , TraesCS5A02G490200 , TraesCS4B02G321800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G313100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G505900 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
2 Sobic.001G469300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cupin domain containing protein, expressed -
3 Sobic.004G322500 - -
4 Sobic.006G155300 aquaporin protein, putative, expressed K09873: aquaporin TIP
5 Sobic.004G065850 - -
6 Sobic.006G011800 - -
7 Sobic.004G020150 - -
8 Sobic.006G210500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, group 3, putative, expressed -
9 Sobic.009G029900 C4-dicarboxylate transporter/malic acid transport protein, expressed -
10 Sobic.007G064400 glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
11 Sobic.004G090300 OsFBX46 - F-box domain containing protein, expressed -
12 Sobic.006G094000 PME/invertase inhibitor, putative, expressed -
13 Sobic.007G156400 Up-reguralion under drought(PubMedID : 24916767)@alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
14 Sobic.008G140500 expressed protein -
15 Sobic.004G187200 ICE-like protease p20 domain containing protein, putative, expressed -
16 Sobic.007G072700 - -
17 Sobic.007G060550 - -
18 Sobic.009G149000 peptide transporter PTR2, putative, expressed -
19 Sobic.001G234000 expressed protein -
20 Sobic.003G165401 - -


Gene co-expression network
sample Sobic001G313100 Sobic001G313100 Sobic001G505900 Sobic001G505900 Sobic001G313100--Sobic001G505900 Sobic001G469300 Sobic001G469300 Sobic001G313100--Sobic001G469300 Sobic004G322500 Sobic004G322500 Sobic001G313100--Sobic004G322500 Sobic006G155300 Sobic006G155300 Sobic001G313100--Sobic006G155300 Sobic004G065850 Sobic004G065850 Sobic001G313100--Sobic004G065850 Sobic006G011800 Sobic006G011800 Sobic001G313100--Sobic006G011800 Sobic004G020150 Sobic004G020150 Sobic001G313100--Sobic004G020150 Sobic006G210500 Sobic006G210500 Sobic001G313100--Sobic006G210500 Sobic009G029900 Sobic009G029900 Sobic001G313100--Sobic009G029900 Sobic001G505900--Sobic001G313100 Sobic001G505900--Sobic006G155300 Sobic001G505900--Sobic001G469300 Sobic001G505900--Sobic004G322500 Sobic001G505900--Sobic006G210500 Sobic008G012800 Sobic008G012800 Sobic001G505900--Sobic008G012800 Sobic002G416300 Sobic002G416300 Sobic001G505900--Sobic002G416300 Sobic007G064400 Sobic007G064400 Sobic001G505900--Sobic007G064400 Sobic001G505900--Sobic004G065850 Sobic001G469300--Sobic006G155300 Sobic001G469300--Sobic006G210500 Sobic001G469300--Sobic001G505900 Sobic001G469300--Sobic004G322500 Sobic001G469300--Sobic001G313100 Sobic007G197500 Sobic007G197500 Sobic001G469300--Sobic007G197500 Sobic003G270200 Sobic003G270200 Sobic001G469300--Sobic003G270200 Sobic001G164700 Sobic001G164700 Sobic001G469300--Sobic001G164700 Sobic001G469300--Sobic002G416300 Sobic004G322500--Sobic004G020150 Sobic004G322500--Sobic001G469300 Sobic004G322500--Sobic006G155300 Sobic004G322500--Sobic001G505900 Sobic004G322500--Sobic001G313100 Sobic007G218900 Sobic007G218900 Sobic004G322500--Sobic007G218900 Sobic009G239400 Sobic009G239400 Sobic004G322500--Sobic009G239400 Sobic001G242400 Sobic001G242400 Sobic004G322500--Sobic001G242400 Sobic004G322500--Sobic001G164700 Sobic006G155300--Sobic001G469300 Sobic006G155300--Sobic006G210500 Sobic006G155300--Sobic001G505900 Sobic006G155300--Sobic007G197500 Sobic006G155300--Sobic004G322500 Sobic006G155300--Sobic003G270200 Sobic006G155300--Sobic001G313100 Sobic002G212100 Sobic002G212100 Sobic006G155300--Sobic002G212100 Sobic003G215600 Sobic003G215600 Sobic006G155300--Sobic003G215600 Sobic002G104300 Sobic002G104300 Sobic004G065850--Sobic002G104300 Sobic004G065850--Sobic001G313100 Sobic001G083900 Sobic001G083900 Sobic004G065850--Sobic001G083900 Sobic004G065850--Sobic001G505900 Sobic004G065850--Sobic006G155300 Sobic004G065850--Sobic001G469300 Sobic001G485200 Sobic001G485200 Sobic004G065850--Sobic001G485200 Sobic003G392350 Sobic003G392350 Sobic004G065850--Sobic003G392350 Sobic009G043400 Sobic009G043400 Sobic004G065850--Sobic009G043400 Sobic006G011800--Sobic009G029900 Sobic004G187200 Sobic004G187200 Sobic006G011800--Sobic004G187200 Sobic004G090200 Sobic004G090200 Sobic006G011800--Sobic004G090200 Sobic004G090300 Sobic004G090300 Sobic006G011800--Sobic004G090300 Sobic001G234000 Sobic001G234000 Sobic006G011800--Sobic001G234000 Sobic001G530400 Sobic001G530400 Sobic006G011800--Sobic001G530400 Sobic006G011800--Sobic007G064400 Sobic005G191350 Sobic005G191350 Sobic006G011800--Sobic005G191350 Sobic009G041301 Sobic009G041301 Sobic006G011800--Sobic009G041301 Sobic004G020150--Sobic009G239400 Sobic008G140500 Sobic008G140500 Sobic004G020150--Sobic008G140500 Sobic006G142925 Sobic006G142925 Sobic004G020150--Sobic006G142925 Sobic003G165401 Sobic003G165401 Sobic004G020150--Sobic003G165401 Sobic007G127900 Sobic007G127900 Sobic004G020150--Sobic007G127900 Sobic002G069300 Sobic002G069300 Sobic004G020150--Sobic002G069300 Sobic008G069100 Sobic008G069100 Sobic004G020150--Sobic008G069100 Sobic004G102600 Sobic004G102600 Sobic004G020150--Sobic004G102600 Sobic003G137000 Sobic003G137000 Sobic004G020150--Sobic003G137000 Sobic006G210500--Sobic003G270200 Sobic006G210500--Sobic006G155300 Sobic006G210500--Sobic001G469300 Sobic010G041900 Sobic010G041900 Sobic006G210500--Sobic010G041900 Sobic006G210500--Sobic007G197500 Sobic003G130400 Sobic003G130400 Sobic006G210500--Sobic003G130400 Sobic006G210500--Sobic001G505900 Sobic006G143600 Sobic006G143600 Sobic006G210500--Sobic006G143600 Sobic004G092700 Sobic004G092700 Sobic006G210500--Sobic004G092700 Sobic009G029900--Sobic004G187200 Sobic009G029900--Sobic001G530400 Sobic009G029900--Sobic001G234000 Sobic009G029900--Sobic004G090300 Sobic009G029900--Sobic006G011800 Sobic006G279000 Sobic006G279000 Sobic009G029900--Sobic006G279000 Sobic009G029900--Sobic007G064400 Sobic009G029900--Sobic004G090200 Sobic009G029900--Sobic009G041301
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.