Gene annotation
Transcriptome id Sobic.001G327900.1,Sobic.001G327900.2
Synonym Sb01g031720, SGR7, SHR
Functional annotation SHR, putative, expressed
UniProt C5WVK0
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009956; radial pattern formation GO:0008356asymmetric cell division GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G37650 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os07g39820.1 : SHR, putative, expressed
MaizeGDB (Corn) Zm00025a048577 , Zm00025a003008 , Zm00025a015051
Brachypodium KQK15471
Barley HORVU2Hr1G035730.4 , HORVU2Hr1G035730.5 , HORVU2Hr1G035730.2 , HORVU2Hr1G035730.3 , HORVU2Hr1G035730.1 , HORVU2Hr1G035720.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G099600 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
2 Sobic.001G278500 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.005G069000 OsWAK124 - OsWAK receptor-like protein OsWAK-RLP, expressed -
4 Sobic.003G428300 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@OsRR4 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
5 Sobic.004G323900 protein kinase, putative, expressed K09553: stress-induced-phosphoprotein 1
6 Sobic.006G114600 "D11(Ortholog in rice:Tanabe et al., 2005(PubMedID : 31659897)@Wu et al., 2008)"("PubMedID : 26759170,PubMedID : 24597475")@cytochrome P450, putative, expressed K12639: CYP724B1, cytochrome P450 family 724 subfamily B polypeptide 1
7 Sobic.008G079800 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
8 Sobic.010G187500 CRAL/TRIO domain containing protein, expressed -
9 Sobic.003G428800 "basic helix-loop-helix (bHLH) transcription factor, downregulates lignin synthesis in Arabidopisis"(PubMedID : 23698629)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Closest homologue of rice OsIRO2.(PubMedID : 16887895)@helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.004G233800 - -
11 Sobic.006G201700 wall-associated kinase 1, putative, expressed -
12 Sobic.005G154100 OsWAK98 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
13 Sobic.001G314000 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.002G034301 - -
15 Sobic.007G192000 ACR5, putative, expressed -
16 Sobic.001G215600 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
17 Sobic.008G143000 expressed protein -
18 Sobic.010G015800 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
19 Sobic.008G099300 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
20 Sobic.008G099232 - -


Gene co-expression network
sample Sobic001G327900 Sobic001G327900 Sobic008G099600 Sobic008G099600 Sobic001G327900--Sobic008G099600 Sobic001G278500 Sobic001G278500 Sobic001G327900--Sobic001G278500 Sobic005G069000 Sobic005G069000 Sobic001G327900--Sobic005G069000 Sobic003G428300 Sobic003G428300 Sobic001G327900--Sobic003G428300 Sobic004G323900 Sobic004G323900 Sobic001G327900--Sobic004G323900 Sobic006G114600 Sobic006G114600 Sobic001G327900--Sobic006G114600 Sobic008G079800 Sobic008G079800 Sobic001G327900--Sobic008G079800 Sobic010G187500 Sobic010G187500 Sobic001G327900--Sobic010G187500 Sobic003G428800 Sobic003G428800 Sobic001G327900--Sobic003G428800 Sobic008G099600--Sobic001G278500 Sobic008G099600--Sobic005G069000 Sobic008G099600--Sobic001G327900 Sobic008G099232 Sobic008G099232 Sobic008G099600--Sobic008G099232 Sobic006G201700 Sobic006G201700 Sobic008G099600--Sobic006G201700 Sobic008G099300 Sobic008G099300 Sobic008G099600--Sobic008G099300 Sobic008G099600--Sobic003G428800 Sobic009G225800 Sobic009G225800 Sobic008G099600--Sobic009G225800 Sobic008G099600--Sobic008G079800 Sobic001G278500--Sobic008G099600 Sobic001G278500--Sobic005G069000 Sobic001G278500--Sobic008G099232 Sobic001G278500--Sobic003G428800 Sobic004G121900 Sobic004G121900 Sobic001G278500--Sobic004G121900 Sobic001G278500--Sobic001G327900 Sobic001G278500--Sobic008G099300 Sobic005G068900 Sobic005G068900 Sobic001G278500--Sobic005G068900 Sobic001G278500--Sobic008G079800 Sobic007G057300 Sobic007G057300 Sobic005G069000--Sobic007G057300 Sobic005G069000--Sobic003G428800 Sobic005G069000--Sobic001G278500 Sobic005G069000--Sobic009G225800 Sobic005G069000--Sobic008G099600 Sobic005G069000--Sobic005G068900 Sobic008G008801 Sobic008G008801 Sobic005G069000--Sobic008G008801 Sobic007G015100 Sobic007G015100 Sobic005G069000--Sobic007G015100 Sobic005G069000--Sobic008G099300 Sobic003G426200 Sobic003G426200 Sobic003G428300--Sobic003G426200 Sobic003G428300--Sobic008G079800 Sobic004G165300 Sobic004G165300 Sobic003G428300--Sobic004G165300 Sobic006G117100 Sobic006G117100 Sobic003G428300--Sobic006G117100 Sobic007G192000 Sobic007G192000 Sobic003G428300--Sobic007G192000 Sobic003G082700 Sobic003G082700 Sobic003G428300--Sobic003G082700 Sobic002G415000 Sobic002G415000 Sobic003G428300--Sobic002G415000 Sobic003G105000 Sobic003G105000 Sobic003G428300--Sobic003G105000 Sobic002G094600 Sobic002G094600 Sobic003G428300--Sobic002G094600 Sobic003G192600 Sobic003G192600 Sobic004G323900--Sobic003G192600 Sobic003G287400 Sobic003G287400 Sobic004G323900--Sobic003G287400 Sobic005G075400 Sobic005G075400 Sobic004G323900--Sobic005G075400 Sobic003G287450 Sobic003G287450 Sobic004G323900--Sobic003G287450 Sobic004G059600 Sobic004G059600 Sobic004G323900--Sobic004G059600 Sobic004G312500 Sobic004G312500 Sobic004G323900--Sobic004G312500 Sobic002G411000 Sobic002G411000 Sobic004G323900--Sobic002G411000 Sobic006G108300 Sobic006G108300 Sobic004G323900--Sobic006G108300 Sobic006G009700 Sobic006G009700 Sobic004G323900--Sobic006G009700 Sobic005G231300 Sobic005G231300 Sobic006G114600--Sobic005G231300 Sobic001G314000 Sobic001G314000 Sobic006G114600--Sobic001G314000 Sobic001G514300 Sobic001G514300 Sobic006G114600--Sobic001G514300 Sobic010G176800 Sobic010G176800 Sobic006G114600--Sobic010G176800 Sobic009G079900 Sobic009G079900 Sobic006G114600--Sobic009G079900 Sobic009G210400 Sobic009G210400 Sobic006G114600--Sobic009G210400 Sobic002G034301 Sobic002G034301 Sobic006G114600--Sobic002G034301 Sobic006G201000 Sobic006G201000 Sobic006G114600--Sobic006G201000 Sobic001G076300 Sobic001G076300 Sobic006G114600--Sobic001G076300 Sobic008G079800--Sobic009G225800 Sobic008G079800--Sobic003G426200 Sobic005G079100 Sobic005G079100 Sobic008G079800--Sobic005G079100 Sobic003G167300 Sobic003G167300 Sobic008G079800--Sobic003G167300 Sobic005G046400 Sobic005G046400 Sobic008G079800--Sobic005G046400 Sobic001G499900 Sobic001G499900 Sobic008G079800--Sobic001G499900 Sobic003G441601 Sobic003G441601 Sobic008G079800--Sobic003G441601 Sobic007G220400 Sobic007G220400 Sobic008G079800--Sobic007G220400 Sobic006G205700 Sobic006G205700 Sobic008G079800--Sobic006G205700 Sobic005G110541 Sobic005G110541 Sobic010G187500--Sobic005G110541 Sobic005G100800 Sobic005G100800 Sobic010G187500--Sobic005G100800 Sobic002G030650 Sobic002G030650 Sobic010G187500--Sobic002G030650 Sobic010G093300 Sobic010G093300 Sobic010G187500--Sobic010G093300 Sobic007G193200 Sobic007G193200 Sobic010G187500--Sobic007G193200 Sobic001G353200 Sobic001G353200 Sobic010G187500--Sobic001G353200 Sobic003G023600 Sobic003G023600 Sobic010G187500--Sobic003G023600 Sobic006G224500 Sobic006G224500 Sobic010G187500--Sobic006G224500 Sobic005G194900 Sobic005G194900 Sobic010G187500--Sobic005G194900 Sobic003G428800--Sobic005G069000 Sobic003G428800--Sobic007G057300 Sobic003G428800--Sobic008G008801 Sobic003G428800--Sobic004G121900 Sobic003G428800--Sobic002G030650 Sobic003G428800--Sobic008G099600 Sobic003G428800--Sobic001G278500 Sobic003G428800--Sobic007G015100 Sobic002G381200 Sobic002G381200 Sobic003G428800--Sobic002G381200
Octagon: transcription factors


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