Gene annotation
Transcriptome id Sobic.003G428800.2,Sobic.003G428800.1
Synonym BHLH039, (SbIRO2), ORG3, SbbHLH1;basic helix-loop-helix (bHLH) transcription factor 1, basic helix-loop-helix (bHLH) transcription factor 1, SbbHLH1;bHLH transcription factor, Sb03g046090
Functional annotation "basic helix-loop-helix (bHLH) transcription factor, downregulates lignin synthesis in Arabidopisis" (PubMedID : 23698629)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Closest homologue of rice OsIRO2. (PubMedID : 16887895)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6Q894 , A0A1B6Q890
Pfam PF00010
Panther DB PTHR13935 PTHR13935:SF41
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G56970 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g72370.1,LOC_Os01g72370.3 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039113 , Zm00025a025947
Brachypodium PNT68610
Barley HORVU3Hr1G108680.5 , HORVU3Hr1G108680.6 , HORVU3Hr1G108680.7 , HORVU3Hr1G108680.1 , HORVU3Hr1G108680.8 , HORVU3Hr1G108680.9 , HORVU3Hr1G108680.4 , HORVU3Hr1G108680.3 , HORVU2Hr1G114070.3 , HORVU2Hr1G114070.1 , HORVU2Hr1G114070.2
Wheat TraesCS2A02G515300 , TraesCS2A02G515300 , TraesCS3D02G495700 , TraesCS3A02G489700 , TraesCS2B02G543700 , TraesCS2B02G543800 , TraesCS2B02G543800 , TraesCS3B02G550200 , TraesCS3B02G550200 , TraesCS2D02G517000 , TraesCS3D02G495600 , TraesCS3D02G495600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G069000 OsWAK124 - OsWAK receptor-like protein OsWAK-RLP, expressed -
2 Sobic.007G057300 - -
3 Sobic.008G008801 - -
4 Sobic.004G121900 expansin precursor, putative, expressed -
5 Sobic.002G030650 - -
6 Sobic.008G099600 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
7 Sobic.001G278500 helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.007G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed -
9 Sobic.002G381200 expressed protein -
10 Sobic.004G323900 protein kinase, putative, expressed K09553: stress-induced-phosphoprotein 1
11 Sobic.010G187500 CRAL/TRIO domain containing protein, expressed -
12 Sobic.008G079800 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
13 Sobic.005G197500 NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.004G002901 - K02940: RP-L9e, large subunit ribosomal protein L9e
15 Sobic.006G117100 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
16 Sobic.005G060200 cytochrome P450, putative, expressed -
17 Sobic.005G197400 NBS-LRR disease resistance protein, putative, expressed -
18 Sobic.004G009200 transporter, major facilitator family, putative, expressed K02575: NRT, narK, nrtP, MFS transporter, NNP family, nitrate/nitrite transporter
19 Sobic.007G111800 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
20 Sobic.005G097900 major facilitator superfamily antiporter, putative, expressed -


Gene co-expression network
sample Sobic003G428800 Sobic003G428800 Sobic005G069000 Sobic005G069000 Sobic003G428800--Sobic005G069000 Sobic007G057300 Sobic007G057300 Sobic003G428800--Sobic007G057300 Sobic008G008801 Sobic008G008801 Sobic003G428800--Sobic008G008801 Sobic004G121900 Sobic004G121900 Sobic003G428800--Sobic004G121900 Sobic002G030650 Sobic002G030650 Sobic003G428800--Sobic002G030650 Sobic008G099600 Sobic008G099600 Sobic003G428800--Sobic008G099600 Sobic001G278500 Sobic001G278500 Sobic003G428800--Sobic001G278500 Sobic007G015100 Sobic007G015100 Sobic003G428800--Sobic007G015100 Sobic002G381200 Sobic002G381200 Sobic003G428800--Sobic002G381200 Sobic005G069000--Sobic007G057300 Sobic005G069000--Sobic003G428800 Sobic005G069000--Sobic001G278500 Sobic009G225800 Sobic009G225800 Sobic005G069000--Sobic009G225800 Sobic005G069000--Sobic008G099600 Sobic005G068900 Sobic005G068900 Sobic005G069000--Sobic005G068900 Sobic005G069000--Sobic008G008801 Sobic005G069000--Sobic007G015100 Sobic008G099300 Sobic008G099300 Sobic005G069000--Sobic008G099300 Sobic010G031700 Sobic010G031700 Sobic007G057300--Sobic010G031700 Sobic005G216600 Sobic005G216600 Sobic007G057300--Sobic005G216600 Sobic007G037600 Sobic007G037600 Sobic007G057300--Sobic007G037600 Sobic004G121600 Sobic004G121600 Sobic007G057300--Sobic004G121600 Sobic006G097900 Sobic006G097900 Sobic007G057300--Sobic006G097900 Sobic003G007400 Sobic003G007400 Sobic007G057300--Sobic003G007400 Sobic004G009400 Sobic004G009400 Sobic007G057300--Sobic004G009400 Sobic003G322100 Sobic003G322100 Sobic007G057300--Sobic003G322100 Sobic003G053200 Sobic003G053200 Sobic007G057300--Sobic003G053200 Sobic006G121000 Sobic006G121000 Sobic008G008801--Sobic006G121000 Sobic005G060200 Sobic005G060200 Sobic008G008801--Sobic005G060200 Sobic007G015000 Sobic007G015000 Sobic008G008801--Sobic007G015000 Sobic007G212000 Sobic007G212000 Sobic008G008801--Sobic007G212000 Sobic002G178101 Sobic002G178101 Sobic008G008801--Sobic002G178101 Sobic002G178200 Sobic002G178200 Sobic008G008801--Sobic002G178200 Sobic005G216400 Sobic005G216400 Sobic008G008801--Sobic005G216400 Sobic003G443700 Sobic003G443700 Sobic008G008801--Sobic003G443700 Sobic005G097900 Sobic005G097900 Sobic008G008801--Sobic005G097900 Sobic004G121900--Sobic007G057300 Sobic008G079800 Sobic008G079800 Sobic004G121900--Sobic008G079800 Sobic006G117100 Sobic006G117100 Sobic004G121900--Sobic006G117100 Sobic004G121900--Sobic008G099300 Sobic002G415000 Sobic002G415000 Sobic004G121900--Sobic002G415000 Sobic003G128800 Sobic003G128800 Sobic004G121900--Sobic003G128800 Sobic004G306900 Sobic004G306900 Sobic004G121900--Sobic004G306900 Sobic002G195600 Sobic002G195600 Sobic004G121900--Sobic002G195600 Sobic006G102300 Sobic006G102300 Sobic004G121900--Sobic006G102300 Sobic005G127200 Sobic005G127200 Sobic002G030650--Sobic005G127200 Sobic010G093300 Sobic010G093300 Sobic002G030650--Sobic010G093300 Sobic002G030575 Sobic002G030575 Sobic002G030650--Sobic002G030575 Sobic001G068500 Sobic001G068500 Sobic002G030650--Sobic001G068500 Sobic004G266700 Sobic004G266700 Sobic002G030650--Sobic004G266700 Sobic003G341500 Sobic003G341500 Sobic002G030650--Sobic003G341500 Sobic003G023600 Sobic003G023600 Sobic002G030650--Sobic003G023600 Sobic002G030800 Sobic002G030800 Sobic002G030650--Sobic002G030800 Sobic004G231700 Sobic004G231700 Sobic002G030650--Sobic004G231700 Sobic008G099600--Sobic001G278500 Sobic008G099600--Sobic005G069000 Sobic001G327900 Sobic001G327900 Sobic008G099600--Sobic001G327900 Sobic008G099232 Sobic008G099232 Sobic008G099600--Sobic008G099232 Sobic006G201700 Sobic006G201700 Sobic008G099600--Sobic006G201700 Sobic008G099600--Sobic008G099300 Sobic008G099600--Sobic003G428800 Sobic008G099600--Sobic009G225800 Sobic008G099600--Sobic008G079800 Sobic001G278500--Sobic008G099600 Sobic001G278500--Sobic005G069000 Sobic001G278500--Sobic008G099232 Sobic001G278500--Sobic003G428800 Sobic001G278500--Sobic004G121900 Sobic001G278500--Sobic001G327900 Sobic001G278500--Sobic008G099300 Sobic001G278500--Sobic005G068900 Sobic001G278500--Sobic008G079800 Sobic002G029500 Sobic002G029500 Sobic007G015100--Sobic002G029500 Sobic010G152500 Sobic010G152500 Sobic007G015100--Sobic010G152500 Sobic003G083800 Sobic003G083800 Sobic007G015100--Sobic003G083800 Sobic005G106300 Sobic005G106300 Sobic007G015100--Sobic005G106300 Sobic004G009200 Sobic004G009200 Sobic007G015100--Sobic004G009200 Sobic002G082000 Sobic002G082000 Sobic007G015100--Sobic002G082000 Sobic005G182900 Sobic005G182900 Sobic007G015100--Sobic005G182900 Sobic003G079100 Sobic003G079100 Sobic007G015100--Sobic003G079100 Sobic001G293100 Sobic001G293100 Sobic007G015100--Sobic001G293100 Sobic008G078800 Sobic008G078800 Sobic002G381200--Sobic008G078800 Sobic004G187600 Sobic004G187600 Sobic002G381200--Sobic004G187600 Sobic009G136800 Sobic009G136800 Sobic002G381200--Sobic009G136800 Sobic003G317300 Sobic003G317300 Sobic002G381200--Sobic003G317300 Sobic002G381200--Sobic008G099232 Sobic005G069332 Sobic005G069332 Sobic002G381200--Sobic005G069332 Sobic007G064900 Sobic007G064900 Sobic002G381200--Sobic007G064900 Sobic007G148100 Sobic007G148100 Sobic002G381200--Sobic007G148100 Sobic004G080300 Sobic004G080300 Sobic002G381200--Sobic004G080300
Octagon: transcription factors


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