Gene annotation
Transcriptome id Sobic.001G370000.1,Sobic.001G370000.3,Sobic.001G370000.2
Synonym ATKCR1, Sb01g035200, YBR159, KCR1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
estradiol 17-beta-dehydrogenase 12, putative, expressed
UniProt C5WZR7 , A0A1B6QN65 , A0A1Z5S9J5
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF591
NCBI CDD KOG1014; 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3
KEGG Orthology K10251; HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67730 : beta-ketoacyl reductase 1
RAP-DB (Rice) LOC_Os11g24484.1 : estradiol 17-beta-dehydrogenase 12, putative, expressed
MaizeGDB (Corn) Zm00025a002492
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G370000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G420800 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
2 Sobic.001G482300 3-ketoacyl-CoA synthase 10, putative, expressed K15397: 3-ketoacyl-CoA synthase
3 Sobic.010G246700 glycosyl hydrolases family 16, putative, expressed K14504: xyloglucan:xyloglucosyl transferase TCH4
4 Sobic.001G356400 expansin precursor, putative, expressed -
5 Sobic.009G154100 expressed protein -
6 Sobic.001G221900 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
7 Sobic.002G315000 - -
8 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
9 Sobic.005G209900 expressed protein -
10 Sobic.002G142500 expressed protein -
11 Sobic.001G298800 ternary complex factor MIP1, putative, expressed -
12 Sobic.007G210900 expressed protein -
13 Sobic.010G107200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
14 Sobic.005G104100 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.006G125800 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
16 Sobic.003G333000 LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.008G171100 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.010G135300 expressed protein -
19 Sobic.003G360700 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
20 Sobic.005G204100 kelch repeat protein, putative, expressed -


Gene co-expression network
sample Sobic001G370000 Sobic001G370000 Sobic003G420800 Sobic003G420800 Sobic001G370000--Sobic003G420800 Sobic001G482300 Sobic001G482300 Sobic001G370000--Sobic001G482300 Sobic010G246700 Sobic010G246700 Sobic001G370000--Sobic010G246700 Sobic001G356400 Sobic001G356400 Sobic001G370000--Sobic001G356400 Sobic009G154100 Sobic009G154100 Sobic001G370000--Sobic009G154100 Sobic001G221900 Sobic001G221900 Sobic001G370000--Sobic001G221900 Sobic002G315000 Sobic002G315000 Sobic001G370000--Sobic002G315000 Sobic009G235700 Sobic009G235700 Sobic001G370000--Sobic009G235700 Sobic005G209900 Sobic005G209900 Sobic001G370000--Sobic005G209900 Sobic007G210900 Sobic007G210900 Sobic003G420800--Sobic007G210900 Sobic003G420800--Sobic002G315000 Sobic005G204100 Sobic005G204100 Sobic003G420800--Sobic005G204100 Sobic003G420800--Sobic009G154100 Sobic002G179700 Sobic002G179700 Sobic003G420800--Sobic002G179700 Sobic003G333000 Sobic003G333000 Sobic003G420800--Sobic003G333000 Sobic003G174900 Sobic003G174900 Sobic003G420800--Sobic003G174900 Sobic003G420800--Sobic001G482300 Sobic001G047200 Sobic001G047200 Sobic003G420800--Sobic001G047200 Sobic003G096300 Sobic003G096300 Sobic001G482300--Sobic003G096300 Sobic001G482300--Sobic002G315000 Sobic001G482300--Sobic003G420800 Sobic001G482300--Sobic001G047200 Sobic002G064400 Sobic002G064400 Sobic001G482300--Sobic002G064400 Sobic001G482300--Sobic005G204100 Sobic009G083300 Sobic009G083300 Sobic001G482300--Sobic009G083300 Sobic008G038200 Sobic008G038200 Sobic001G482300--Sobic008G038200 Sobic001G482300--Sobic001G370000 Sobic009G055900 Sobic009G055900 Sobic010G246700--Sobic009G055900 Sobic008G171100 Sobic008G171100 Sobic010G246700--Sobic008G171100 Sobic006G219200 Sobic006G219200 Sobic010G246700--Sobic006G219200 Sobic010G246700--Sobic001G370000 Sobic002G201100 Sobic002G201100 Sobic010G246700--Sobic002G201100 Sobic002G142500 Sobic002G142500 Sobic010G246700--Sobic002G142500 Sobic006G249100 Sobic006G249100 Sobic010G246700--Sobic006G249100 Sobic010G037600 Sobic010G037600 Sobic010G246700--Sobic010G037600 Sobic009G216300 Sobic009G216300 Sobic010G246700--Sobic009G216300 Sobic002G072700 Sobic002G072700 Sobic001G356400--Sobic002G072700 Sobic007G189400 Sobic007G189400 Sobic001G356400--Sobic007G189400 Sobic001G356400--Sobic009G154100 Sobic001G356400--Sobic005G209900 Sobic005G227050 Sobic005G227050 Sobic001G356400--Sobic005G227050 Sobic001G356400--Sobic002G179700 Sobic001G228100 Sobic001G228100 Sobic001G356400--Sobic001G228100 Sobic005G188500 Sobic005G188500 Sobic001G356400--Sobic005G188500 Sobic001G356400--Sobic002G315000 Sobic010G107200 Sobic010G107200 Sobic009G154100--Sobic010G107200 Sobic009G154100--Sobic005G209900 Sobic009G154100--Sobic002G315000 Sobic007G012800 Sobic007G012800 Sobic009G154100--Sobic007G012800 Sobic009G154100--Sobic002G179700 Sobic009G154100--Sobic007G189400 Sobic009G154100--Sobic005G227050 Sobic009G154100--Sobic001G221900 Sobic006G032800 Sobic006G032800 Sobic009G154100--Sobic006G032800 Sobic003G070600 Sobic003G070600 Sobic001G221900--Sobic003G070600 Sobic001G221900--Sobic009G235700 Sobic010G020600 Sobic010G020600 Sobic001G221900--Sobic010G020600 Sobic010G078700 Sobic010G078700 Sobic001G221900--Sobic010G078700 Sobic003G339600 Sobic003G339600 Sobic001G221900--Sobic003G339600 Sobic001G199400 Sobic001G199400 Sobic001G221900--Sobic001G199400 Sobic004G248100 Sobic004G248100 Sobic001G221900--Sobic004G248100 Sobic001G074000 Sobic001G074000 Sobic001G221900--Sobic001G074000 Sobic003G113500 Sobic003G113500 Sobic001G221900--Sobic003G113500 Sobic002G315000--Sobic009G154100 Sobic002G315000--Sobic003G333000 Sobic002G315000--Sobic003G420800 Sobic002G315000--Sobic001G221900 Sobic002G315000--Sobic001G228100 Sobic002G315000--Sobic005G227050 Sobic002G315000--Sobic002G072700 Sobic002G315000--Sobic001G482300 Sobic002G315000--Sobic002G179700 Sobic006G125800 Sobic006G125800 Sobic009G235700--Sobic006G125800 Sobic009G235700--Sobic010G020600 Sobic009G235700--Sobic001G221900 Sobic009G235700--Sobic004G248100 Sobic009G235700--Sobic003G339600 Sobic001G522300 Sobic001G522300 Sobic009G235700--Sobic001G522300 Sobic007G165800 Sobic007G165800 Sobic009G235700--Sobic007G165800 Sobic004G283800 Sobic004G283800 Sobic009G235700--Sobic004G283800 Sobic003G360700 Sobic003G360700 Sobic009G235700--Sobic003G360700 Sobic005G209900--Sobic010G107200 Sobic005G196500 Sobic005G196500 Sobic005G209900--Sobic005G196500 Sobic005G209900--Sobic009G154100 Sobic005G209900--Sobic005G227050 Sobic006G233600 Sobic006G233600 Sobic005G209900--Sobic006G233600 Sobic005G209900--Sobic007G012800 Sobic007G142300 Sobic007G142300 Sobic005G209900--Sobic007G142300 Sobic005G147800 Sobic005G147800 Sobic005G209900--Sobic005G147800 Sobic005G209900--Sobic002G179700
Octagon: transcription factors


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