Gene annotation
Transcriptome id Sobic.001G446500.1
Synonym Sb01g041960
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6QPJ6
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF103
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37850 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g12760.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001422 , Zm00025a001423
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G186200 patatin, putative, expressed -
2 Sobic.001G442600 expressed protein -
3 Sobic.002G105600 glyoxalase family protein, putative, expressed K00457: HPD, 4-hydroxyphenylpyruvate dioxygenase
4 Sobic.010G083300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed -
5 Sobic.003G324200 expressed protein -
6 Sobic.010G275150 - K15322: tRNA-splicing endonuclease subunit Sen2
7 Sobic.002G266400 - -
8 Sobic.005G183700 transferase family protein, putative, expressed -
9 Sobic.001G309666 - -
10 Sobic.001G438900 - -
11 Sobic.001G421450 - -
12 Sobic.010G003000 - -
13 Sobic.006G056300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@reticuline oxidase-like protein precursor, putative, expressed -
14 Sobic.002G041666 - -
15 Sobic.002G348500 expressed protein -
16 Sobic.001G385200 emp24/gp25L/p24 family protein, putative, expressed -
17 Sobic.006G097000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
18 Sobic.002G172300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G033100 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.008G161900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@cysteine-rich receptor-like protein kinase 8 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G446500 Sobic001G446500 Sobic005G186200 Sobic005G186200 Sobic001G446500--Sobic005G186200 Sobic001G442600 Sobic001G442600 Sobic001G446500--Sobic001G442600 Sobic002G105600 Sobic002G105600 Sobic001G446500--Sobic002G105600 Sobic010G083300 Sobic010G083300 Sobic001G446500--Sobic010G083300 Sobic003G324200 Sobic003G324200 Sobic001G446500--Sobic003G324200 Sobic010G275150 Sobic010G275150 Sobic001G446500--Sobic010G275150 Sobic002G266400 Sobic002G266400 Sobic001G446500--Sobic002G266400 Sobic005G183700 Sobic005G183700 Sobic001G446500--Sobic005G183700 Sobic001G309666 Sobic001G309666 Sobic001G446500--Sobic001G309666 Sobic005G186200--Sobic001G446500 Sobic004G203200 Sobic004G203200 Sobic005G186200--Sobic004G203200 Sobic004G332500 Sobic004G332500 Sobic005G186200--Sobic004G332500 Sobic005G186200--Sobic002G266400 Sobic003G364500 Sobic003G364500 Sobic005G186200--Sobic003G364500 Sobic002G035400 Sobic002G035400 Sobic005G186200--Sobic002G035400 Sobic001G207633 Sobic001G207633 Sobic005G186200--Sobic001G207633 Sobic005G186200--Sobic001G442600 Sobic002G012400 Sobic002G012400 Sobic005G186200--Sobic002G012400 Sobic006G097000 Sobic006G097000 Sobic001G442600--Sobic006G097000 Sobic001G442600--Sobic001G446500 Sobic002G348500 Sobic002G348500 Sobic001G442600--Sobic002G348500 Sobic001G442600--Sobic005G186200 Sobic001G442600--Sobic010G083300 Sobic004G106600 Sobic004G106600 Sobic001G442600--Sobic004G106600 Sobic010G198800 Sobic010G198800 Sobic001G442600--Sobic010G198800 Sobic004G156000 Sobic004G156000 Sobic001G442600--Sobic004G156000 Sobic005G170100 Sobic005G170100 Sobic001G442600--Sobic005G170100 Sobic002G191450 Sobic002G191450 Sobic002G105600--Sobic002G191450 Sobic001G064400 Sobic001G064400 Sobic002G105600--Sobic001G064400 Sobic004G221800 Sobic004G221800 Sobic002G105600--Sobic004G221800 Sobic009G043800 Sobic009G043800 Sobic002G105600--Sobic009G043800 Sobic003G229900 Sobic003G229900 Sobic002G105600--Sobic003G229900 Sobic003G073200 Sobic003G073200 Sobic002G105600--Sobic003G073200 Sobic002G114200 Sobic002G114200 Sobic002G105600--Sobic002G114200 Sobic007G007100 Sobic007G007100 Sobic002G105600--Sobic007G007100 Sobic006G049633 Sobic006G049633 Sobic002G105600--Sobic006G049633 Sobic001G075300 Sobic001G075300 Sobic010G083300--Sobic001G075300 Sobic002G185400 Sobic002G185400 Sobic010G083300--Sobic002G185400 Sobic005G196700 Sobic005G196700 Sobic010G083300--Sobic005G196700 Sobic007G115600 Sobic007G115600 Sobic010G083300--Sobic007G115600 Sobic006G223850 Sobic006G223850 Sobic010G083300--Sobic006G223850 Sobic004G163400 Sobic004G163400 Sobic010G083300--Sobic004G163400 Sobic007G077600 Sobic007G077600 Sobic010G083300--Sobic007G077600 Sobic010G083050 Sobic010G083050 Sobic010G083300--Sobic010G083050 Sobic003G331900 Sobic003G331900 Sobic010G083300--Sobic003G331900 Sobic004G279900 Sobic004G279900 Sobic003G324200--Sobic004G279900 Sobic001G438900 Sobic001G438900 Sobic003G324200--Sobic001G438900 Sobic003G324200--Sobic001G446500 Sobic007G122866 Sobic007G122866 Sobic003G324200--Sobic007G122866 Sobic010G234100 Sobic010G234100 Sobic003G324200--Sobic010G234100 Sobic003G223600 Sobic003G223600 Sobic003G324200--Sobic003G223600 Sobic002G059700 Sobic002G059700 Sobic003G324200--Sobic002G059700 Sobic001G052500 Sobic001G052500 Sobic003G324200--Sobic001G052500 Sobic009G240100 Sobic009G240100 Sobic003G324200--Sobic009G240100 Sobic010G215201 Sobic010G215201 Sobic010G275150--Sobic010G215201 Sobic002G054800 Sobic002G054800 Sobic010G275150--Sobic002G054800 Sobic005G073300 Sobic005G073300 Sobic010G275150--Sobic005G073300 Sobic001G071500 Sobic001G071500 Sobic010G275150--Sobic001G071500 Sobic002G132201 Sobic002G132201 Sobic010G275150--Sobic002G132201 Sobic006G161200 Sobic006G161200 Sobic010G275150--Sobic006G161200 Sobic006G141200 Sobic006G141200 Sobic010G275150--Sobic006G141200 Sobic008G030801 Sobic008G030801 Sobic010G275150--Sobic008G030801 Sobic002G240200 Sobic002G240200 Sobic010G275150--Sobic002G240200 Sobic002G266400--Sobic002G012400 Sobic002G266400--Sobic002G348500 Sobic002G266400--Sobic005G186200 Sobic002G266400--Sobic004G332500 Sobic003G414800 Sobic003G414800 Sobic002G266400--Sobic003G414800 Sobic003G414900 Sobic003G414900 Sobic002G266400--Sobic003G414900 Sobic002G266400--Sobic006G097000 Sobic002G266400--Sobic003G364500 Sobic001G100600 Sobic001G100600 Sobic002G266400--Sobic001G100600 Sobic006G056300 Sobic006G056300 Sobic005G183700--Sobic006G056300 Sobic003G245000 Sobic003G245000 Sobic005G183700--Sobic003G245000 Sobic005G183700--Sobic006G141200 Sobic001G421450 Sobic001G421450 Sobic005G183700--Sobic001G421450 Sobic005G183700--Sobic002G132201 Sobic005G183700--Sobic007G007100 Sobic001G273950 Sobic001G273950 Sobic005G183700--Sobic001G273950 Sobic003G253650 Sobic003G253650 Sobic005G183700--Sobic003G253650 Sobic003G149700 Sobic003G149700 Sobic005G183700--Sobic003G149700 Sobic002G172300 Sobic002G172300 Sobic001G309666--Sobic002G172300 Sobic001G309666--Sobic010G215201 Sobic003G089500 Sobic003G089500 Sobic001G309666--Sobic003G089500 Sobic001G309666--Sobic005G073300 Sobic001G309666--Sobic002G054800 Sobic001G309666--Sobic001G071500 Sobic001G309666--Sobic002G240200 Sobic001G309666--Sobic008G030801 Sobic001G309666--Sobic002G132201
Octagon: transcription factors


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