Gene annotation
Transcriptome id Sobic.005G186200.1
Synonym PLP4, Sb05g024390, AtPLAIVC, PLAV
Functional annotation patatin, putative, expressed
UniProt Q9XE77 , C5Y6D5
Pfam PF01734
Panther DB PTHR32176 PTHR32176:SF10
NCBI CDD KOG0513; Ca2+-independent phospholipase A2
KEGG Orthology -
Gene Ontology GO:0006629; lipid metabolic process


Orthologs (automatic annotation)
TAIR AT2G26560 : phospholipase A 2A
RAP-DB (Rice) LOC_Os11g39990.1 : patatin, putative, expressed
MaizeGDB (Corn) Zm00025a015878 , Zm00025a029371 , Zm00025a015884
Brachypodium KQJ98604 , KQJ98659 , KQJ87809
Barley HORVU1Hr1G012140.11 , HORVU1Hr1G012140.10 , HORVU1Hr1G012140.12 , HORVU1Hr1G069200.1 , HORVU1Hr1G069200.2 , HORVU1Hr1G069200.3 , HORVU4Hr1G074970.1 , HORVU4Hr1G074970.3 , HORVU4Hr1G074970.2 , HORVU4Hr1G074970.4 , HORVU1Hr1G012140.7 , HORVU7Hr1G036460.6 , HORVU7Hr1G036460.7 , HORVU7Hr1G036460.4 , HORVU7Hr1G036460.5 , HORVU7Hr1G036460.2 , HORVU7Hr1G036460.3 , HORVU7Hr1G036460.1 , HORVU7Hr1G036460.8 , HORVU7Hr1G036460.9 , HORVU4Hr1G075070.9 , HORVU4Hr1G075070.8 , HORVU4Hr1G075070.3 , HORVU4Hr1G075070.2 , HORVU4Hr1G075070.7 , HORVU4Hr1G075070.6 , HORVU4Hr1G075070.5 , HORVU4Hr1G075070.4 , HORVU1Hr1G012140.9 , HORVU1Hr1G012140.8 , HORVU1Hr1G012140.5 , HORVU1Hr1G012140.4 , HORVU1Hr1G012140.6 , HORVU1Hr1G012140.1 , HORVU1Hr1G012140.3 , HORVU1Hr1G012140.2 , HORVU3Hr1G004220.4 , HORVU3Hr1G004220.6 , HORVU3Hr1G004220.1 , HORVU3Hr1G004220.3 , HORVU3Hr1G004220.2
Wheat TraesCS1B02G077500 , TraesCS7B02G082400 , TraesCS1D02G302900 , TraesCS4B02G286000 , TraesCS1A02G059100 , TraesCS4D02G284700 , TraesCS7D02G178600 , TraesCS4B02G286600 , TraesCS7A02G177300 , TraesCS4A02G018100 , TraesCS1D02G060500 , TraesCS3D02G033500 , TraesCS1B02G313800 , TraesCS3D02G033200 , TraesCS1A02G303400 , TraesCS4A02G017400
Populus -


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cDNA sequences
Sobic.005G186200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G446500 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.004G203200 BTBZ4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed -
3 Sobic.004G332500 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.002G266400 - -
5 Sobic.003G364500 receptor-like protein kinase, putative, expressed -
6 Sobic.002G035400 - -
7 Sobic.001G207633 - -
8 Sobic.001G442600 expressed protein -
9 Sobic.002G012400 DUF538 domain containing protein, putative, expressed -
10 Sobic.009G048201 - K09287: RAV-like factor
11 Sobic.006G056300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@reticuline oxidase-like protein precursor, putative, expressed -
12 Sobic.006G097000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
13 Sobic.003G414800 DUF567 domain containing protein, putative, expressed -
14 Sobic.005G228250 - -
15 Sobic.007G077600 MBTB20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
16 Sobic.009G171500 expressed protein -
17 Sobic.003G143100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
18 Sobic.005G183700 transferase family protein, putative, expressed -
19 Sobic.002G424350 - K02183: calmodulin
20 Sobic.002G348500 expressed protein -


Gene co-expression network
sample Sobic005G186200 Sobic005G186200 Sobic001G446500 Sobic001G446500 Sobic005G186200--Sobic001G446500 Sobic004G203200 Sobic004G203200 Sobic005G186200--Sobic004G203200 Sobic004G332500 Sobic004G332500 Sobic005G186200--Sobic004G332500 Sobic002G266400 Sobic002G266400 Sobic005G186200--Sobic002G266400 Sobic003G364500 Sobic003G364500 Sobic005G186200--Sobic003G364500 Sobic002G035400 Sobic002G035400 Sobic005G186200--Sobic002G035400 Sobic001G207633 Sobic001G207633 Sobic005G186200--Sobic001G207633 Sobic001G442600 Sobic001G442600 Sobic005G186200--Sobic001G442600 Sobic002G012400 Sobic002G012400 Sobic005G186200--Sobic002G012400 Sobic001G446500--Sobic005G186200 Sobic001G446500--Sobic001G442600 Sobic002G105600 Sobic002G105600 Sobic001G446500--Sobic002G105600 Sobic010G083300 Sobic010G083300 Sobic001G446500--Sobic010G083300 Sobic003G324200 Sobic003G324200 Sobic001G446500--Sobic003G324200 Sobic010G275150 Sobic010G275150 Sobic001G446500--Sobic010G275150 Sobic001G446500--Sobic002G266400 Sobic005G183700 Sobic005G183700 Sobic001G446500--Sobic005G183700 Sobic001G309666 Sobic001G309666 Sobic001G446500--Sobic001G309666 Sobic004G203200--Sobic004G332500 Sobic001G169500 Sobic001G169500 Sobic004G203200--Sobic001G169500 Sobic004G336500 Sobic004G336500 Sobic004G203200--Sobic004G336500 Sobic006G046900 Sobic006G046900 Sobic004G203200--Sobic006G046900 Sobic003G319500 Sobic003G319500 Sobic004G203200--Sobic003G319500 Sobic003G084400 Sobic003G084400 Sobic004G203200--Sobic003G084400 Sobic005G011300 Sobic005G011300 Sobic004G203200--Sobic005G011300 Sobic001G139100 Sobic001G139100 Sobic004G203200--Sobic001G139100 Sobic004G340900 Sobic004G340900 Sobic004G203200--Sobic004G340900 Sobic004G332500--Sobic004G203200 Sobic001G279300 Sobic001G279300 Sobic004G332500--Sobic001G279300 Sobic009G069800 Sobic009G069800 Sobic004G332500--Sobic009G069800 Sobic002G042000 Sobic002G042000 Sobic004G332500--Sobic002G042000 Sobic004G332500--Sobic004G336500 Sobic002G224500 Sobic002G224500 Sobic004G332500--Sobic002G224500 Sobic009G154200 Sobic009G154200 Sobic004G332500--Sobic009G154200 Sobic007G008100 Sobic007G008100 Sobic004G332500--Sobic007G008100 Sobic003G041600 Sobic003G041600 Sobic004G332500--Sobic003G041600 Sobic002G266400--Sobic002G012400 Sobic002G348500 Sobic002G348500 Sobic002G266400--Sobic002G348500 Sobic002G266400--Sobic005G186200 Sobic002G266400--Sobic004G332500 Sobic003G414800 Sobic003G414800 Sobic002G266400--Sobic003G414800 Sobic003G414900 Sobic003G414900 Sobic002G266400--Sobic003G414900 Sobic006G097000 Sobic006G097000 Sobic002G266400--Sobic006G097000 Sobic002G266400--Sobic003G364500 Sobic001G100600 Sobic001G100600 Sobic002G266400--Sobic001G100600 Sobic003G364500--Sobic004G332500 Sobic003G364500--Sobic005G186200 Sobic003G364500--Sobic004G203200 Sobic003G364500--Sobic002G266400 Sobic006G075500 Sobic006G075500 Sobic003G364500--Sobic006G075500 Sobic009G141201 Sobic009G141201 Sobic003G364500--Sobic009G141201 Sobic003G364500--Sobic002G012400 Sobic008G018400 Sobic008G018400 Sobic003G364500--Sobic008G018400 Sobic010G045700 Sobic010G045700 Sobic003G364500--Sobic010G045700 Sobic002G035400--Sobic005G186200 Sobic002G424350 Sobic002G424350 Sobic002G035400--Sobic002G424350 Sobic002G035400--Sobic003G364500 Sobic002G035400--Sobic004G203200 Sobic001G052900 Sobic001G052900 Sobic002G035400--Sobic001G052900 Sobic002G035400--Sobic004G332500 Sobic003G231300 Sobic003G231300 Sobic002G035400--Sobic003G231300 Sobic003G219700 Sobic003G219700 Sobic002G035400--Sobic003G219700 Sobic010G246300 Sobic010G246300 Sobic002G035400--Sobic010G246300 Sobic001G207633--Sobic005G186200 Sobic010G223800 Sobic010G223800 Sobic001G207633--Sobic010G223800 Sobic006G056300 Sobic006G056300 Sobic001G207633--Sobic006G056300 Sobic009G048201 Sobic009G048201 Sobic001G207633--Sobic009G048201 Sobic001G207633--Sobic010G246300 Sobic001G207633--Sobic003G414900 Sobic001G207633--Sobic005G183700 Sobic005G228250 Sobic005G228250 Sobic001G207633--Sobic005G228250 Sobic003G299100 Sobic003G299100 Sobic001G207633--Sobic003G299100 Sobic001G442600--Sobic006G097000 Sobic001G442600--Sobic001G446500 Sobic001G442600--Sobic002G348500 Sobic001G442600--Sobic005G186200 Sobic001G442600--Sobic010G083300 Sobic004G106600 Sobic004G106600 Sobic001G442600--Sobic004G106600 Sobic010G198800 Sobic010G198800 Sobic001G442600--Sobic010G198800 Sobic004G156000 Sobic004G156000 Sobic001G442600--Sobic004G156000 Sobic005G170100 Sobic005G170100 Sobic001G442600--Sobic005G170100 Sobic005G086600 Sobic005G086600 Sobic002G012400--Sobic005G086600 Sobic006G008000 Sobic006G008000 Sobic002G012400--Sobic006G008000 Sobic002G012300 Sobic002G012300 Sobic002G012400--Sobic002G012300 Sobic002G012500 Sobic002G012500 Sobic002G012400--Sobic002G012500 Sobic008G066200 Sobic008G066200 Sobic002G012400--Sobic008G066200 Sobic003G079200 Sobic003G079200 Sobic002G012400--Sobic003G079200 Sobic002G012400--Sobic003G414800 Sobic001G259400 Sobic001G259400 Sobic002G012400--Sobic001G259400 Sobic001G188800 Sobic001G188800 Sobic002G012400--Sobic001G188800
Octagon: transcription factors


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