Gene annotation
| Transcriptome id | Sobic.009G048201.1 |
|---|---|
| Synonym | - |
| Functional annotation | - |
| UniProt | A0A1Z5R241 |
| Pfam | PF02362 |
| Panther DB | PTHR31140 PTHR31140:SF9 |
| NCBI CDD | - |
| KEGG Orthology | K09287; RAV-like factor |
| Gene Ontology | GO:0003677; DNA binding |
Orthologs (automatic annotation)
| TAIR | AT1G13260 : related to ABI3/VP1 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g04800.1 : B3 DNA binding domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a023512 , Zm00025a038878 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G012400 | DUF538 domain containing protein, putative, expressed | - |
| 2 | Sobic.001G044400 | UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 3 | Sobic.005G186200 | patatin, putative, expressed | - |
| 4 | Sobic.004G332500 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 5 | Sobic.003G414900 | DUF567 domain containing protein, putative, expressed | - |
| 6 | Sobic.006G253700 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR23 - Auxin-responsive SAUR gene family member, expressed | K14488: SAUR family protein |
| 7 | Sobic.001G207633 | - | - |
| 8 | Sobic.004G203200 | BTBZ4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed | - |
| 9 | Sobic.001G279300 | Up-reguralion under heat(PubMedID : 24916767)@VQ domain containing protein, putative, expressed | - |
| 10 | Sobic.003G380900 | Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659872)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed | - |
| 11 | Sobic.003G364500 | receptor-like protein kinase, putative, expressed | - |
| 12 | Sobic.009G171500 | expressed protein | - |
| 13 | Sobic.003G414800 | DUF567 domain containing protein, putative, expressed | - |
| 14 | Sobic.002G266400 | - | - |
| 15 | Sobic.003G043550 | - | - |
| 16 | Sobic.005G002700 | sorgoleone-producing in root hair(PubmedID : 15361534)@fatty acid desaturase, putative, expressed | K10257: FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase |
| 17 | Sobic.003G324200 | expressed protein | - |
| 18 | Sobic.006G007900 | SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed | - |
| 19 | Sobic.001G079300 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 20 | Sobic.001G259400 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
Gene co-expression network
Octagon: transcription factors
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