Gene annotation
Transcriptome id Sobic.003G380900.1
Synonym SbERF40;prominent TF regulators with AP2 domain for host defense, SbERF40;ethylene response factor 40, ethylene response factor 40, Sb03g042060
Functional annotation Not investigated (PubMedID : 23766026)
"SERF1(Ortholog in rice:Schmidt et al., 2013)" (PubMedID : 31659872)
transcription factor (PubMedID : 30367619)
AP2 domain containing protein, expressed
UniProt A0A1B6Q7F6
Pfam PF00847
Panther DB PTHR31985 PTHR31985:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G71520 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os01g66270.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020096
Brachypodium KQK10945
Barley HORVU3Hr1G090740.3 , HORVU3Hr1G090740.2 , HORVU3Hr1G090740.1 , HORVU1Hr1G064030.1 , HORVU1Hr1G064030.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.009G122400 expressed protein -
4 Sobic.010G209200 WRKY28, expressed -
5 Sobic.004G191400 - -
6 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
7 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
8 Sobic.001G205350 - -
9 Sobic.003G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.003G064200 MYB family transcription factor, putative, expressed -
11 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
12 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
13 Sobic.009G192600 Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
14 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
15 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
16 Sobic.001G035100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@ZOS3-21 - C2H2 zinc finger protein, expressed -
17 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
18 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
19 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
20 Sobic.007G122800 expressed protein -


Gene co-expression network
sample Sobic003G380900 Sobic003G380900 Sobic003G428700 Sobic003G428700 Sobic003G380900--Sobic003G428700 Sobic001G079300 Sobic001G079300 Sobic003G380900--Sobic001G079300 Sobic009G122400 Sobic009G122400 Sobic003G380900--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic003G380900--Sobic010G209200 Sobic004G191400 Sobic004G191400 Sobic003G380900--Sobic004G191400 Sobic004G222500 Sobic004G222500 Sobic003G380900--Sobic004G222500 Sobic009G247900 Sobic009G247900 Sobic003G380900--Sobic009G247900 Sobic001G205350 Sobic001G205350 Sobic003G380900--Sobic001G205350 Sobic003G093000 Sobic003G093000 Sobic003G380900--Sobic003G093000 Sobic003G428700--Sobic009G122400 Sobic003G428700--Sobic010G209200 Sobic003G428700--Sobic004G191400 Sobic004G169200 Sobic004G169200 Sobic003G428700--Sobic004G169200 Sobic003G428700--Sobic003G093000 Sobic003G428700--Sobic004G222500 Sobic003G428700--Sobic009G247900 Sobic002G220000 Sobic002G220000 Sobic003G428700--Sobic002G220000 Sobic001G035100 Sobic001G035100 Sobic003G428700--Sobic001G035100 Sobic001G079300--Sobic004G191400 Sobic004G191300 Sobic004G191300 Sobic001G079300--Sobic004G191300 Sobic001G079300--Sobic010G209200 Sobic003G228900 Sobic003G228900 Sobic001G079300--Sobic003G228900 Sobic001G138600 Sobic001G138600 Sobic001G079300--Sobic001G138600 Sobic001G079300--Sobic009G122400 Sobic003G260300 Sobic003G260300 Sobic001G079300--Sobic003G260300 Sobic004G141200 Sobic004G141200 Sobic001G079300--Sobic004G141200 Sobic009G184000 Sobic009G184000 Sobic001G079300--Sobic009G184000 Sobic009G122400--Sobic004G191400 Sobic009G122400--Sobic010G209200 Sobic009G122400--Sobic004G191300 Sobic009G122400--Sobic003G428700 Sobic009G122400--Sobic003G228900 Sobic009G122400--Sobic001G079300 Sobic001G330400 Sobic001G330400 Sobic009G122400--Sobic001G330400 Sobic001G256700 Sobic001G256700 Sobic009G122400--Sobic001G256700 Sobic002G388900 Sobic002G388900 Sobic009G122400--Sobic002G388900 Sobic010G209200--Sobic009G122400 Sobic010G209200--Sobic004G191400 Sobic010G209200--Sobic003G428700 Sobic010G209200--Sobic003G228900 Sobic010G209200--Sobic001G079300 Sobic010G209200--Sobic004G191300 Sobic010G209200--Sobic001G138600 Sobic007G213800 Sobic007G213800 Sobic010G209200--Sobic007G213800 Sobic010G209200--Sobic009G184000 Sobic004G191400--Sobic004G191300 Sobic004G191400--Sobic001G079300 Sobic004G191400--Sobic009G122400 Sobic004G191400--Sobic010G209200 Sobic007G122800 Sobic007G122800 Sobic004G191400--Sobic007G122800 Sobic004G191400--Sobic003G228900 Sobic004G308900 Sobic004G308900 Sobic004G191400--Sobic004G308900 Sobic004G191400--Sobic003G428700 Sobic004G294400 Sobic004G294400 Sobic004G191400--Sobic004G294400 Sobic002G140300 Sobic002G140300 Sobic004G222500--Sobic002G140300 Sobic004G222500--Sobic003G093000 Sobic003G092900 Sobic003G092900 Sobic004G222500--Sobic003G092900 Sobic004G222500--Sobic003G428700 Sobic006G183400 Sobic006G183400 Sobic004G222500--Sobic006G183400 Sobic004G222500--Sobic009G247900 Sobic004G222500--Sobic001G035100 Sobic004G222500--Sobic002G220000 Sobic006G179500 Sobic006G179500 Sobic004G222500--Sobic006G179500 Sobic007G074000 Sobic007G074000 Sobic009G247900--Sobic007G074000 Sobic003G202200 Sobic003G202200 Sobic009G247900--Sobic003G202200 Sobic001G383700 Sobic001G383700 Sobic009G247900--Sobic001G383700 Sobic009G247900--Sobic003G228900 Sobic009G247900--Sobic003G428700 Sobic009G247900--Sobic010G209200 Sobic009G036100 Sobic009G036100 Sobic009G247900--Sobic009G036100 Sobic009G036000 Sobic009G036000 Sobic009G247900--Sobic009G036000 Sobic004G341800 Sobic004G341800 Sobic009G247900--Sobic004G341800 Sobic002G282300 Sobic002G282300 Sobic001G205350--Sobic002G282300 Sobic006G230900 Sobic006G230900 Sobic001G205350--Sobic006G230900 Sobic001G205350--Sobic007G213800 Sobic001G205350--Sobic004G169200 Sobic001G338600 Sobic001G338600 Sobic001G205350--Sobic001G338600 Sobic006G231200 Sobic006G231200 Sobic001G205350--Sobic006G231200 Sobic002G189100 Sobic002G189100 Sobic001G205350--Sobic002G189100 Sobic001G205350--Sobic003G380900 Sobic001G205350--Sobic003G428700 Sobic003G093000--Sobic002G220000 Sobic003G093000--Sobic003G092900 Sobic003G093000--Sobic002G189100 Sobic003G093000--Sobic004G222500 Sobic003G093000--Sobic003G428700 Sobic003G093000--Sobic004G191400 Sobic003G093000--Sobic003G228900 Sobic003G093000--Sobic009G122400 Sobic010G259300 Sobic010G259300 Sobic003G093000--Sobic010G259300
Octagon: transcription factors


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