Gene annotation
Transcriptome id Sobic.005G002700.1
Synonym SOR1, Sb05g000390, FAD3
Functional annotation sorgoleone-producing in root hair(PubmedID : 15361534)
fatty acid desaturase, putative, expressed
UniProt Q594P3
Pfam PF11960 PF00487
Panther DB PTHR32100 PTHR32100:SF14
NCBI CDD -
KEGG Orthology K10257; FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
Gene Ontology GO:0016717; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water GO:0006629lipid metabolic process


Orthologs (automatic annotation)
TAIR AT5G05580 : fatty acid desaturase 8
RAP-DB (Rice) LOC_Os12g01370.1 : fatty acid desaturase, putative, expressed
MaizeGDB (Corn) Zm00025a028922
Brachypodium KQJ92651
Barley HORVU5Hr1G048240.6 , HORVU5Hr1G048240.3 , HORVU5Hr1G048240.2 , HORVU5Hr1G048240.4 , HORVU5Hr1G048240.7 , HORVU5Hr1G048240.9 , HORVU5Hr1G048240.8 , HORVU5Hr1G048240.5 , HORVU5Hr1G048240.1
Wheat TraesCS5B02G153000 , TraesCS5A02G154800 , TraesCS5D02G159700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -
2 Sobic.001G487600 Lectin protein kinase family protein("PubMedID : 26759170,PubMedID : 24597475")@protein kinase domain containing protein, expressed -
3 Sobic.008G022000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
4 Sobic.002G012400 DUF538 domain containing protein, putative, expressed -
5 Sobic.009G171500 expressed protein -
6 Sobic.006G096000 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.003G426600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.008G036800 alkylresorcinol synthase gene preferentially expressed in root hair (PubMedID : 20348430)@Chalcone and stilbene synthase family("PubMedID : 26759170,PubMedID : 24597475")@chalcone synthase, putative, expressed -
9 Sobic.001G280800 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.001G259400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
11 Sobic.009G200566 - -
12 Sobic.002G012300 DUF538 domain containing protein, putative, expressed -
13 Sobic.008G158800 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.008G066401 - -
15 Sobic.006G008000 O-methyltransferase, putative, expressed -
16 Sobic.008G066200 expressed protein -
17 Sobic.006G132800 expressed protein -
18 Sobic.008G158600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
20 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic005G002700 Sobic005G002700 Sobic002G012500 Sobic002G012500 Sobic005G002700--Sobic002G012500 Sobic001G487600 Sobic001G487600 Sobic005G002700--Sobic001G487600 Sobic008G022000 Sobic008G022000 Sobic005G002700--Sobic008G022000 Sobic002G012400 Sobic002G012400 Sobic005G002700--Sobic002G012400 Sobic009G171500 Sobic009G171500 Sobic005G002700--Sobic009G171500 Sobic006G096000 Sobic006G096000 Sobic005G002700--Sobic006G096000 Sobic003G426600 Sobic003G426600 Sobic005G002700--Sobic003G426600 Sobic008G036800 Sobic008G036800 Sobic005G002700--Sobic008G036800 Sobic001G280800 Sobic001G280800 Sobic005G002700--Sobic001G280800 Sobic006G008000 Sobic006G008000 Sobic002G012500--Sobic006G008000 Sobic001G259400 Sobic001G259400 Sobic002G012500--Sobic001G259400 Sobic008G066200 Sobic008G066200 Sobic002G012500--Sobic008G066200 Sobic002G012300 Sobic002G012300 Sobic002G012500--Sobic002G012300 Sobic008G066401 Sobic008G066401 Sobic002G012500--Sobic008G066401 Sobic003G079200 Sobic003G079200 Sobic002G012500--Sobic003G079200 Sobic002G012500--Sobic008G022000 Sobic008G158600 Sobic008G158600 Sobic002G012500--Sobic008G158600 Sobic009G145600 Sobic009G145600 Sobic002G012500--Sobic009G145600 Sobic001G487600--Sobic003G426600 Sobic001G487600--Sobic001G280800 Sobic001G487600--Sobic002G012500 Sobic001G487600--Sobic008G036800 Sobic003G376100 Sobic003G376100 Sobic001G487600--Sobic003G376100 Sobic004G022900 Sobic004G022900 Sobic001G487600--Sobic004G022900 Sobic001G487600--Sobic008G022000 Sobic001G487600--Sobic008G158600 Sobic001G487600--Sobic009G145600 Sobic008G022000--Sobic002G012300 Sobic008G022000--Sobic006G008000 Sobic008G022000--Sobic008G066200 Sobic008G022000--Sobic002G012500 Sobic008G158501 Sobic008G158501 Sobic008G022000--Sobic008G158501 Sobic008G022000--Sobic003G079200 Sobic008G022000--Sobic008G158600 Sobic008G022000--Sobic008G036800 Sobic008G022000--Sobic003G426600 Sobic005G086600 Sobic005G086600 Sobic002G012400--Sobic005G086600 Sobic002G012400--Sobic006G008000 Sobic002G012400--Sobic002G012300 Sobic002G012400--Sobic002G012500 Sobic002G012400--Sobic008G066200 Sobic002G012400--Sobic003G079200 Sobic003G414800 Sobic003G414800 Sobic002G012400--Sobic003G414800 Sobic002G012400--Sobic001G259400 Sobic001G188800 Sobic001G188800 Sobic002G012400--Sobic001G188800 Sobic009G171500--Sobic003G426600 Sobic009G171500--Sobic002G012500 Sobic009G171500--Sobic006G008000 Sobic002G294000 Sobic002G294000 Sobic009G171500--Sobic002G294000 Sobic009G171500--Sobic008G022000 Sobic006G235100 Sobic006G235100 Sobic009G171500--Sobic006G235100 Sobic004G141100 Sobic004G141100 Sobic009G171500--Sobic004G141100 Sobic009G171500--Sobic008G066200 Sobic010G082600 Sobic010G082600 Sobic009G171500--Sobic010G082600 Sobic006G096000--Sobic003G426600 Sobic006G234466 Sobic006G234466 Sobic006G096000--Sobic006G234466 Sobic006G096000--Sobic009G171500 Sobic006G096000--Sobic008G022000 Sobic006G096000--Sobic002G012300 Sobic010G045500 Sobic010G045500 Sobic006G096000--Sobic010G045500 Sobic006G096000--Sobic002G012500 Sobic010G196000 Sobic010G196000 Sobic006G096000--Sobic010G196000 Sobic008G127933 Sobic008G127933 Sobic006G096000--Sobic008G127933 Sobic003G426600--Sobic006G008000 Sobic003G426600--Sobic002G012500 Sobic003G426600--Sobic008G022000 Sobic003G426600--Sobic002G012300 Sobic003G426600--Sobic010G082600 Sobic003G426600--Sobic009G171500 Sobic003G426600--Sobic010G196000 Sobic003G426600--Sobic008G066200 Sobic003G426600--Sobic004G141100 Sobic008G036800--Sobic002G012300 Sobic008G036800--Sobic002G012500 Sobic008G036800--Sobic008G022000 Sobic008G036800--Sobic008G158600 Sobic008G036800--Sobic008G158501 Sobic008G036800--Sobic003G426600 Sobic008G036800--Sobic008G066200 Sobic008G036800--Sobic006G008000 Sobic002G044600 Sobic002G044600 Sobic008G036800--Sobic002G044600 Sobic010G198600 Sobic010G198600 Sobic001G280800--Sobic010G198600 Sobic004G336500 Sobic004G336500 Sobic001G280800--Sobic004G336500 Sobic001G279300 Sobic001G279300 Sobic001G280800--Sobic001G279300 Sobic009G069800 Sobic009G069800 Sobic001G280800--Sobic009G069800 Sobic004G004400 Sobic004G004400 Sobic001G280800--Sobic004G004400 Sobic010G225251 Sobic010G225251 Sobic001G280800--Sobic010G225251 Sobic009G145700 Sobic009G145700 Sobic001G280800--Sobic009G145700 Sobic001G280800--Sobic008G066401 Sobic004G109900 Sobic004G109900 Sobic001G280800--Sobic004G109900
Octagon: transcription factors


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