Gene annotation
Transcriptome id Sobic.002G012400.1
Synonym Sb02g001310
Functional annotation DUF538 domain containing protein, putative, expressed
UniProt C5X7W9
Pfam PF04398
Panther DB PTHR31676 PTHR31676:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09310 : Protein of unknown function, DUF538
RAP-DB (Rice) LOC_Os07g02850.1 : DUF538 domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G086600 O-methyltransferase, putative, expressed -
2 Sobic.006G008000 O-methyltransferase, putative, expressed -
3 Sobic.002G012300 DUF538 domain containing protein, putative, expressed -
4 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -
5 Sobic.008G066200 expressed protein -
6 Sobic.003G079200 - -
7 Sobic.003G414800 DUF567 domain containing protein, putative, expressed -
8 Sobic.001G259400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
9 Sobic.001G188800 cysteine-rich repeat secretory protein 55 precursor, putative, expressed -
10 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
11 Sobic.008G022000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
12 Sobic.008G158600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.006G235100 expressed protein -
14 Sobic.010G043900 expressed protein -
15 Sobic.010G082600 EF hand family protein, putative, expressed -
16 Sobic.003G073380 - -
17 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
19 Sobic.009G171500 expressed protein -
20 Sobic.004G161751 - -


Gene co-expression network
sample Sobic002G012400 Sobic002G012400 Sobic005G086600 Sobic005G086600 Sobic002G012400--Sobic005G086600 Sobic006G008000 Sobic006G008000 Sobic002G012400--Sobic006G008000 Sobic002G012300 Sobic002G012300 Sobic002G012400--Sobic002G012300 Sobic002G012500 Sobic002G012500 Sobic002G012400--Sobic002G012500 Sobic008G066200 Sobic008G066200 Sobic002G012400--Sobic008G066200 Sobic003G079200 Sobic003G079200 Sobic002G012400--Sobic003G079200 Sobic003G414800 Sobic003G414800 Sobic002G012400--Sobic003G414800 Sobic001G259400 Sobic001G259400 Sobic002G012400--Sobic001G259400 Sobic001G188800 Sobic001G188800 Sobic002G012400--Sobic001G188800 Sobic005G086600--Sobic006G008000 Sobic003G268600 Sobic003G268600 Sobic005G086600--Sobic003G268600 Sobic003G073380 Sobic003G073380 Sobic005G086600--Sobic003G073380 Sobic005G086600--Sobic003G079200 Sobic006G235100 Sobic006G235100 Sobic005G086600--Sobic006G235100 Sobic006G007900 Sobic006G007900 Sobic005G086600--Sobic006G007900 Sobic003G442100 Sobic003G442100 Sobic005G086600--Sobic003G442100 Sobic004G161751 Sobic004G161751 Sobic005G086600--Sobic004G161751 Sobic005G086600--Sobic001G259400 Sobic006G008000--Sobic008G066200 Sobic006G008000--Sobic002G012500 Sobic006G008000--Sobic003G079200 Sobic006G008000--Sobic005G086600 Sobic006G008000--Sobic002G012300 Sobic009G145600 Sobic009G145600 Sobic006G008000--Sobic009G145600 Sobic009G145700 Sobic009G145700 Sobic006G008000--Sobic009G145700 Sobic008G022000 Sobic008G022000 Sobic006G008000--Sobic008G022000 Sobic008G066401 Sobic008G066401 Sobic006G008000--Sobic008G066401 Sobic008G158600 Sobic008G158600 Sobic002G012300--Sobic008G158600 Sobic008G158501 Sobic008G158501 Sobic002G012300--Sobic008G158501 Sobic002G012300--Sobic008G022000 Sobic002G012300--Sobic003G079200 Sobic002G012300--Sobic006G008000 Sobic002G012300--Sobic002G012500 Sobic002G012300--Sobic008G066200 Sobic008G036800 Sobic008G036800 Sobic002G012300--Sobic008G036800 Sobic002G063800 Sobic002G063800 Sobic002G012300--Sobic002G063800 Sobic002G012500--Sobic006G008000 Sobic002G012500--Sobic001G259400 Sobic002G012500--Sobic008G066200 Sobic002G012500--Sobic002G012300 Sobic002G012500--Sobic008G066401 Sobic002G012500--Sobic003G079200 Sobic002G012500--Sobic008G022000 Sobic002G012500--Sobic008G158600 Sobic002G012500--Sobic009G145600 Sobic008G066200--Sobic006G008000 Sobic008G066200--Sobic002G012500 Sobic008G066200--Sobic009G145700 Sobic008G066200--Sobic003G079200 Sobic008G066200--Sobic009G145600 Sobic008G066200--Sobic008G066401 Sobic008G066200--Sobic008G022000 Sobic008G066200--Sobic002G012300 Sobic008G066200--Sobic001G188800 Sobic003G079200--Sobic006G008000 Sobic003G079200--Sobic008G066200 Sobic003G079200--Sobic002G012300 Sobic003G079200--Sobic009G145600 Sobic003G079200--Sobic008G158600 Sobic003G079200--Sobic002G012500 Sobic003G079200--Sobic002G063800 Sobic003G079200--Sobic004G161751 Sobic003G079200--Sobic005G086600 Sobic002G351300 Sobic002G351300 Sobic003G414800--Sobic002G351300 Sobic001G330300 Sobic001G330300 Sobic003G414800--Sobic001G330300 Sobic004G141100 Sobic004G141100 Sobic003G414800--Sobic004G141100 Sobic007G058400 Sobic007G058400 Sobic003G414800--Sobic007G058400 Sobic009G188000 Sobic009G188000 Sobic003G414800--Sobic009G188000 Sobic004G216300 Sobic004G216300 Sobic003G414800--Sobic004G216300 Sobic003G414800--Sobic005G086600 Sobic007G017500 Sobic007G017500 Sobic003G414800--Sobic007G017500 Sobic006G217100 Sobic006G217100 Sobic003G414800--Sobic006G217100 Sobic001G259400--Sobic002G012500 Sobic001G259400--Sobic006G007900 Sobic001G259400--Sobic008G066401 Sobic001G259400--Sobic005G086600 Sobic004G064500 Sobic004G064500 Sobic001G259400--Sobic004G064500 Sobic001G259400--Sobic003G079200 Sobic001G259400--Sobic008G066200 Sobic001G259400--Sobic006G008000 Sobic001G259400--Sobic008G158600 Sobic001G188800--Sobic006G008000 Sobic001G188800--Sobic008G066200 Sobic001G188800--Sobic005G086600 Sobic001G188800--Sobic003G079200 Sobic001G188800--Sobic002G012300 Sobic001G188800--Sobic008G022000 Sobic001G188800--Sobic004G161751 Sobic001G188800--Sobic002G012500 Sobic001G114900 Sobic001G114900 Sobic001G188800--Sobic001G114900
Octagon: transcription factors


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