Gene annotation
Transcriptome id Sobic.008G036800.1
Synonym TT4, alkylresorcinol synthase 1, ARS1;alkylresorcinol synthase 1, ATCHS, ARS1, Sb08g003170, CHS
Functional annotation alkylresorcinol synthase gene preferentially expressed in root hair (PubMedID : 20348430)
Chalcone and stilbene synthase family( (PubMedID : 26759170,(PubMedID : 24597475)
chalcone synthase, putative, expressed
UniProt C5YRS1
Pfam PF08541 PF00195
Panther DB PTHR11877 PTHR11877:SF23
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os07g31770.1 : chalcone synthase, putative, expressed
MaizeGDB (Corn) Zm00025a033583
Brachypodium KQJ89844 , KQK13828 , KQK19828
Barley HORVU5Hr1G093950.3 , HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU7Hr1G020920.4 , HORVU7Hr1G020920.5 , HORVU7Hr1G020920.6 , HORVU7Hr1G020920.7 , HORVU7Hr1G020920.1 , HORVU7Hr1G020920.2 , HORVU7Hr1G020920.3 , HORVU4Hr1G003250.2 , HORVU4Hr1G003250.1 , HORVU7Hr1G024480.2 , HORVU7Hr1G024480.1 , HORVU7Hr1G009190.1 , HORVU6Hr1G074060.1 , HORVU6Hr1G074060.2 , HORVU5Hr1G093950.4 , HORVU5Hr1G093950.1 , HORVU5Hr1G093950.2 , HORVU2Hr1G116390.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3 , HORVU2Hr1G116390.4
Wheat TraesCS2B02G048400 , TraesCS6A02G298400 , TraesCS6D02G278200 , TraesCS7D02G089300 , TraesCS2B02G558400 , TraesCS2B02G558400 , TraesCS4D02G351300 , TraesCS5B02G487700 , TraesCS2A02G025600 , TraesCS2A02G035300 , TraesCS4A02G437900 , TraesCS4B02G357100 , TraesCS6D02G018500 , TraesCS2D02G051300 , TraesCS5A02G526900 , TraesCS7A02G093900 , TraesCS6B02G327900 , TraesCS6B02G022500 , TraesCS4A02G292500 , TraesCS5B02G383300 , TraesCS2A02G527700 , TraesCS2A02G527700 , TraesCS5A02G379400 , TraesCS2D02G530600 , TraesCS5A02G379500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G012300 DUF538 domain containing protein, putative, expressed -
2 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -
3 Sobic.008G022000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
4 Sobic.008G158600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.008G158501 - -
6 Sobic.003G426600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.008G066200 expressed protein -
8 Sobic.006G008000 O-methyltransferase, putative, expressed -
9 Sobic.002G044600 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.001G259400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
11 Sobic.003G079200 - -
12 Sobic.001G487600 Lectin protein kinase family protein("PubMedID : 26759170,PubMedID : 24597475")@protein kinase domain containing protein, expressed -
13 Sobic.009G171500 expressed protein -
14 Sobic.002G063800 transferase family protein, putative, expressed -
15 Sobic.008G066401 - -
16 Sobic.009G145600 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.006G101100 expressed protein -
18 Sobic.003G313100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.001G162233 - -
20 Sobic.010G082600 EF hand family protein, putative, expressed -


Gene co-expression network
sample Sobic008G036800 Sobic008G036800 Sobic002G012300 Sobic002G012300 Sobic008G036800--Sobic002G012300 Sobic002G012500 Sobic002G012500 Sobic008G036800--Sobic002G012500 Sobic008G022000 Sobic008G022000 Sobic008G036800--Sobic008G022000 Sobic008G158600 Sobic008G158600 Sobic008G036800--Sobic008G158600 Sobic008G158501 Sobic008G158501 Sobic008G036800--Sobic008G158501 Sobic003G426600 Sobic003G426600 Sobic008G036800--Sobic003G426600 Sobic008G066200 Sobic008G066200 Sobic008G036800--Sobic008G066200 Sobic006G008000 Sobic006G008000 Sobic008G036800--Sobic006G008000 Sobic002G044600 Sobic002G044600 Sobic008G036800--Sobic002G044600 Sobic002G012300--Sobic008G158600 Sobic002G012300--Sobic008G158501 Sobic002G012300--Sobic008G022000 Sobic003G079200 Sobic003G079200 Sobic002G012300--Sobic003G079200 Sobic002G012300--Sobic006G008000 Sobic002G012300--Sobic002G012500 Sobic002G012300--Sobic008G066200 Sobic002G012300--Sobic008G036800 Sobic002G063800 Sobic002G063800 Sobic002G012300--Sobic002G063800 Sobic002G012500--Sobic006G008000 Sobic001G259400 Sobic001G259400 Sobic002G012500--Sobic001G259400 Sobic002G012500--Sobic008G066200 Sobic002G012500--Sobic002G012300 Sobic008G066401 Sobic008G066401 Sobic002G012500--Sobic008G066401 Sobic002G012500--Sobic003G079200 Sobic002G012500--Sobic008G022000 Sobic002G012500--Sobic008G158600 Sobic009G145600 Sobic009G145600 Sobic002G012500--Sobic009G145600 Sobic008G022000--Sobic002G012300 Sobic008G022000--Sobic006G008000 Sobic008G022000--Sobic008G066200 Sobic008G022000--Sobic002G012500 Sobic008G022000--Sobic008G158501 Sobic008G022000--Sobic003G079200 Sobic008G022000--Sobic008G158600 Sobic008G022000--Sobic008G036800 Sobic008G022000--Sobic003G426600 Sobic008G158600--Sobic002G012300 Sobic008G158600--Sobic003G079200 Sobic008G158600--Sobic008G158501 Sobic008G158600--Sobic002G012500 Sobic008G158600--Sobic002G063800 Sobic008G158600--Sobic008G022000 Sobic008G158600--Sobic008G036800 Sobic008G158600--Sobic006G008000 Sobic008G158600--Sobic001G259400 Sobic008G158501--Sobic002G012300 Sobic008G158501--Sobic008G158600 Sobic008G158501--Sobic008G022000 Sobic008G158501--Sobic003G079200 Sobic008G158501--Sobic002G012500 Sobic008G158501--Sobic006G008000 Sobic008G158501--Sobic002G063800 Sobic008G158501--Sobic008G066200 Sobic008G158501--Sobic008G036800 Sobic003G426600--Sobic006G008000 Sobic003G426600--Sobic002G012500 Sobic003G426600--Sobic008G022000 Sobic003G426600--Sobic002G012300 Sobic010G082600 Sobic010G082600 Sobic003G426600--Sobic010G082600 Sobic009G171500 Sobic009G171500 Sobic003G426600--Sobic009G171500 Sobic010G196000 Sobic010G196000 Sobic003G426600--Sobic010G196000 Sobic003G426600--Sobic008G066200 Sobic004G141100 Sobic004G141100 Sobic003G426600--Sobic004G141100 Sobic008G066200--Sobic006G008000 Sobic008G066200--Sobic002G012500 Sobic009G145700 Sobic009G145700 Sobic008G066200--Sobic009G145700 Sobic008G066200--Sobic003G079200 Sobic008G066200--Sobic009G145600 Sobic008G066200--Sobic008G066401 Sobic008G066200--Sobic008G022000 Sobic008G066200--Sobic002G012300 Sobic001G188800 Sobic001G188800 Sobic008G066200--Sobic001G188800 Sobic006G008000--Sobic008G066200 Sobic006G008000--Sobic002G012500 Sobic006G008000--Sobic003G079200 Sobic005G086600 Sobic005G086600 Sobic006G008000--Sobic005G086600 Sobic006G008000--Sobic002G012300 Sobic006G008000--Sobic009G145600 Sobic006G008000--Sobic009G145700 Sobic006G008000--Sobic008G022000 Sobic006G008000--Sobic008G066401 Sobic002G044600--Sobic008G036800 Sobic006G026500 Sobic006G026500 Sobic002G044600--Sobic006G026500 Sobic001G062132 Sobic001G062132 Sobic002G044600--Sobic001G062132 Sobic002G044600--Sobic002G012300 Sobic006G234900 Sobic006G234900 Sobic002G044600--Sobic006G234900 Sobic006G101300 Sobic006G101300 Sobic002G044600--Sobic006G101300 Sobic002G044600--Sobic008G158501 Sobic002G044600--Sobic008G158600 Sobic002G044600--Sobic008G022000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.