Gene annotation
| Transcriptome id | Sobic.004G332500.1 |
|---|---|
| Synonym | Sb04g036120 |
| Functional annotation | zinc finger, C3HC4 type domain containing protein, expressed |
| UniProt | C5XV17 |
| Pfam | PF13639 |
| Panther DB | PTHR22763 PTHR22763:SF64 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008270; zinc ion binding GO:0005515protein binding |
Orthologs (automatic annotation)
| TAIR | AT3G02340 : RING/U-box superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g06740.1 : zinc finger, C3HC4 type domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a022492 |
| Brachypodium | KQJ88720 |
| Barley | HORVU5Hr1G051760.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G203200 | BTBZ4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed | - |
| 2 | Sobic.001G279300 | Up-reguralion under heat(PubMedID : 24916767)@VQ domain containing protein, putative, expressed | - |
| 3 | Sobic.009G069800 | Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed | K00844: hexokinase |
| 4 | Sobic.002G042000 | gibberellin receptor GID1L2, putative, expressed | - |
| 5 | Sobic.004G336500 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 6 | Sobic.002G224500 | down-regulated TF in developmental senescence(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed | - |
| 7 | Sobic.009G154200 | MYB family transcription factor, putative, expressed | - |
| 8 | Sobic.007G008100 | invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 9 | Sobic.003G041600 | DUF623 domain containing protein, expressed | - |
| 10 | Sobic.003G364500 | receptor-like protein kinase, putative, expressed | - |
| 11 | Sobic.010G166500 | amino acid transporter, putative, expressed | - |
| 12 | Sobic.004G109900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 13 | Sobic.005G186200 | patatin, putative, expressed | - |
| 14 | Sobic.001G112200 | LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 15 | Sobic.010G225251 | - | - |
| 16 | Sobic.008G044300 | U-box domain-containing protein, putative, expressed | - |
| 17 | Sobic.003G364300 | similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 18 | Sobic.001G280800 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 19 | Sobic.003G367200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed | K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78 |
| 20 | Sobic.001G279500 | VQ domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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