Gene annotation
Transcriptome id Sobic.001G471100.2,Sobic.001G471100.1
Synonym Sb01g044130, AGD2
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
aminotransferase, classes I and II, domain containing protein, expressed
UniProt A0A1Z5SAX3 , A0A1B6QPY9
Pfam PF00155
Panther DB PTHR11751 PTHR11751:SF376
NCBI CDD KOG0257; Kynurenine aminotransferase, glutamine transaminase K
KEGG Orthology K10206; LL-diaminopimelate aminotransferase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G13810 : AGD2-like defense response protein 1
RAP-DB (Rice) LOC_Os03g09910.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001230
Brachypodium KQK23152
Barley HORVU4Hr1G071300.11 , HORVU4Hr1G071300.10 , HORVU4Hr1G071300.12 , HORVU4Hr1G071300.9 , HORVU4Hr1G071300.8 , HORVU4Hr1G071300.5 , HORVU4Hr1G071300.4 , HORVU4Hr1G071300.7 , HORVU4Hr1G071300.6 , HORVU4Hr1G071300.1 , HORVU4Hr1G071300.3 , HORVU4Hr1G071300.2
Wheat TraesCS4D02G264500 , TraesCS4B02G264500 , TraesCS4A02G043800 , TraesCS4A02G043800 , TraesCS4A02G043800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G246500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase domain containing protein, expressed -
2 Sobic.004G106500 hydroquinone glucosyltransferase, putative, expressed -
3 Sobic.005G161900 cytochrome P450, putative, expressed K05917: sterol 14alpha-demethylase
4 Sobic.K010100 expressed protein -
5 Sobic.001G331000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.010G219800 vacuolar-sorting receptor precursor, putative, expressed -
7 Sobic.005G075400 CHASE domain containing protein, expressed -
8 Sobic.009G015166 - -
9 Sobic.003G141200 receptor-like protein kinase 5 precursor, putative, expressed K13415: protein brassinosteroid insensitive 1
10 Sobic.010G247300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AAA ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
11 Sobic.004G323900 protein kinase, putative, expressed K09553: stress-induced-phosphoprotein 1
12 Sobic.004G108800 cytochrome P450, putative, expressed -
13 Sobic.008G099600 cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
14 Sobic.005G110508 - -
15 Sobic.001G506700 exostosin family domain containing protein, expressed -
16 Sobic.001G238500 similar to Putative uncharacterized protein(PubMedID : 29862293)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
17 Sobic.004G156250 - -
18 Sobic.010G039300 cysteine synthase, putative, expressed K01738: cysteine synthase
19 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G371000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter, putative, expressed -


Gene co-expression network
sample Sobic001G471100 Sobic001G471100 Sobic006G246500 Sobic006G246500 Sobic001G471100--Sobic006G246500 Sobic004G106500 Sobic004G106500 Sobic001G471100--Sobic004G106500 Sobic005G161900 Sobic005G161900 Sobic001G471100--Sobic005G161900 SobicK010100 SobicK010100 Sobic001G471100--SobicK010100 Sobic001G331000 Sobic001G331000 Sobic001G471100--Sobic001G331000 Sobic010G219800 Sobic010G219800 Sobic001G471100--Sobic010G219800 Sobic005G075400 Sobic005G075400 Sobic001G471100--Sobic005G075400 Sobic009G015166 Sobic009G015166 Sobic001G471100--Sobic009G015166 Sobic003G141200 Sobic003G141200 Sobic001G471100--Sobic003G141200 Sobic007G061600 Sobic007G061600 Sobic006G246500--Sobic007G061600 Sobic006G246500--SobicK010100 Sobic002G325500 Sobic002G325500 Sobic006G246500--Sobic002G325500 Sobic005G048400 Sobic005G048400 Sobic006G246500--Sobic005G048400 Sobic002G199200 Sobic002G199200 Sobic006G246500--Sobic002G199200 Sobic006G246500--Sobic003G141200 Sobic006G246500--Sobic010G219800 Sobic003G094700 Sobic003G094700 Sobic006G246500--Sobic003G094700 Sobic001G326400 Sobic001G326400 Sobic006G246500--Sobic001G326400 Sobic008G019900 Sobic008G019900 Sobic004G106500--Sobic008G019900 Sobic004G187600 Sobic004G187600 Sobic004G106500--Sobic004G187600 Sobic008G078800 Sobic008G078800 Sobic004G106500--Sobic008G078800 Sobic004G106500--Sobic002G325500 Sobic004G037100 Sobic004G037100 Sobic004G106500--Sobic004G037100 Sobic004G046400 Sobic004G046400 Sobic004G106500--Sobic004G046400 Sobic002G165020 Sobic002G165020 Sobic004G106500--Sobic002G165020 Sobic006G266800 Sobic006G266800 Sobic004G106500--Sobic006G266800 Sobic007G005100 Sobic007G005100 Sobic004G106500--Sobic007G005100 Sobic004G156250 Sobic004G156250 Sobic005G161900--Sobic004G156250 Sobic004G034200 Sobic004G034200 Sobic005G161900--Sobic004G034200 Sobic004G108800 Sobic004G108800 Sobic005G161900--Sobic004G108800 Sobic005G161900--SobicK010100 Sobic001G131001 Sobic001G131001 Sobic005G161900--Sobic001G131001 Sobic001G238500 Sobic001G238500 Sobic005G161900--Sobic001G238500 Sobic004G126500 Sobic004G126500 Sobic005G161900--Sobic004G126500 Sobic005G104200 Sobic005G104200 Sobic005G161900--Sobic005G104200 Sobic005G161900--Sobic003G141200 Sobic003G080600 Sobic003G080600 SobicK010100--Sobic003G080600 SobicK010100--Sobic002G165020 SobicK010100--Sobic010G219800 Sobic002G235800 Sobic002G235800 SobicK010100--Sobic002G235800 SobicK010100--Sobic005G161900 SobicK010100--Sobic004G106500 Sobic002G424500 Sobic002G424500 SobicK010100--Sobic002G424500 SobicK010100--Sobic002G325500 SobicK010100--Sobic006G246500 Sobic006G228200 Sobic006G228200 Sobic001G331000--Sobic006G228200 Sobic007G158500 Sobic007G158500 Sobic001G331000--Sobic007G158500 Sobic002G067300 Sobic002G067300 Sobic001G331000--Sobic002G067300 Sobic006G031200 Sobic006G031200 Sobic001G331000--Sobic006G031200 Sobic006G021900 Sobic006G021900 Sobic001G331000--Sobic006G021900 Sobic002G214500 Sobic002G214500 Sobic001G331000--Sobic002G214500 Sobic003G428900 Sobic003G428900 Sobic001G331000--Sobic003G428900 Sobic004G167300 Sobic004G167300 Sobic001G331000--Sobic004G167300 Sobic006G274500 Sobic006G274500 Sobic001G331000--Sobic006G274500 Sobic010G219800--SobicK010100 Sobic010G219800--Sobic005G161900 Sobic010G035900 Sobic010G035900 Sobic010G219800--Sobic010G035900 Sobic010G219800--Sobic004G106500 Sobic009G162700 Sobic009G162700 Sobic010G219800--Sobic009G162700 Sobic007G148300 Sobic007G148300 Sobic010G219800--Sobic007G148300 Sobic005G110508 Sobic005G110508 Sobic010G219800--Sobic005G110508 Sobic005G091900 Sobic005G091900 Sobic010G219800--Sobic005G091900 Sobic010G219800--Sobic006G246500 Sobic005G018200 Sobic005G018200 Sobic005G075400--Sobic005G018200 Sobic001G503000 Sobic001G503000 Sobic005G075400--Sobic001G503000 Sobic008G138900 Sobic008G138900 Sobic005G075400--Sobic008G138900 Sobic007G073000 Sobic007G073000 Sobic005G075400--Sobic007G073000 Sobic002G195600 Sobic002G195600 Sobic005G075400--Sobic002G195600 Sobic001G506600 Sobic001G506600 Sobic005G075400--Sobic001G506600 Sobic006G209000 Sobic006G209000 Sobic005G075400--Sobic006G209000 Sobic006G229100 Sobic006G229100 Sobic005G075400--Sobic006G229100 Sobic006G031100 Sobic006G031100 Sobic005G075400--Sobic006G031100 Sobic009G015166--Sobic001G238500 Sobic006G117500 Sobic006G117500 Sobic009G015166--Sobic006G117500 Sobic005G066300 Sobic005G066300 Sobic009G015166--Sobic005G066300 Sobic009G015166--Sobic004G108800 Sobic009G015166--Sobic005G104200 Sobic009G015166--Sobic004G126500 Sobic002G411000 Sobic002G411000 Sobic009G015166--Sobic002G411000 Sobic009G015166--Sobic004G156250 Sobic006G009700 Sobic006G009700 Sobic009G015166--Sobic006G009700 Sobic001G506700 Sobic001G506700 Sobic003G141200--Sobic001G506700 Sobic003G141200--Sobic001G238500 Sobic010G256400 Sobic010G256400 Sobic003G141200--Sobic010G256400 Sobic003G141200--Sobic005G104200 Sobic002G238700 Sobic002G238700 Sobic003G141200--Sobic002G238700 Sobic003G141200--Sobic009G015166 Sobic003G141200--Sobic006G009700 Sobic003G141200--Sobic004G126500 Sobic003G141200--Sobic005G066300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.