Gene annotation
| Transcriptome id | Sobic.010G039300.1 |
|---|---|
| Synonym | ATCS-C, OASC |
| Functional annotation | cysteine synthase, putative, expressed |
| UniProt | A0A194YH60 |
| Pfam | PF00291 |
| Panther DB | PTHR10314 PTHR10314:SF114 |
| NCBI CDD | KOG1252; Cystathionine beta-synthase and related enzymes |
| KEGG Orthology | K01738; cysteine synthase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G59760 : O-acetylserine (thiol) lyase isoform C |
|---|---|
| RAP-DB (Rice) | LOC_Os06g36840.1 : cysteine synthase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a050012 |
| Brachypodium | KQK19850 , KQK19851 , PNT76631 |
| Barley | HORVU7Hr1G021860.10 , HORVU7Hr1G021860.11 , HORVU7Hr1G021860.12 , HORVU7Hr1G021840.18 , HORVU7Hr1G021840.19 , HORVU7Hr1G021860.3 , HORVU7Hr1G021860.6 , HORVU7Hr1G021860.7 , HORVU7Hr1G021860.4 , HORVU7Hr1G021860.5 , HORVU7Hr1G021860.8 , HORVU7Hr1G021860.9 , HORVU7Hr1G021840.22 , HORVU7Hr1G021840.21 , HORVU7Hr1G021840.20 |
| Wheat | TraesCS4A02G401700 , TraesCS4A02G401700 , TraesCS7A02G102700 , TraesCS4A02G401600 , TraesCS7D02G096700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G187600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed | K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 |
| 2 | Sobic.004G106500 | hydroquinone glucosyltransferase, putative, expressed | - |
| 3 | Sobic.004G116800 | harpin-induced protein 1 domain containing protein, expressed | - |
| 4 | Sobic.009G225800 | expressed protein | - |
| 5 | Sobic.003G428800 | "basic helix-loop-helix (bHLH) transcription factor, downregulates lignin synthesis in Arabidopisis"(PubMedID : 23698629)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Closest homologue of rice OsIRO2.(PubMedID : 16887895)@helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 6 | Sobic.008G099600 | cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed | K04730: interleukin-1 receptor-associated kinase 1 |
| 7 | Sobic.002G381200 | expressed protein | - |
| 8 | Sobic.006G101900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed | - |
| 9 | Sobic.008G079800 | Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed | K01188: beta-glucosidase |
| 10 | Sobic.001G353200 | ctr copper transporter family protein, putative, expressed | K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1 |
| 11 | Sobic.004G121900 | expansin precursor, putative, expressed | - |
| 12 | Sobic.003G192600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor-like kinase ARK1AS, putative, expressed | - |
| 13 | Sobic.008G099232 | - | - |
| 14 | Sobic.005G069000 | OsWAK124 - OsWAK receptor-like protein OsWAK-RLP, expressed | - |
| 15 | Sobic.008G099300 | cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed | - |
| 16 | Sobic.004G323900 | protein kinase, putative, expressed | K09553: stress-induced-phosphoprotein 1 |
| 17 | Sobic.004G178600 | OsFBX1 - F-box domain containing protein, expressed | - |
| 18 | Sobic.005G110541 | - | K16054: methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 |
| 19 | Sobic.004G059600 | DUF581 domain containing protein, expressed | - |
| 20 | Sobic.008G013800 | lectin-like receptor kinase 1, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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