Gene annotation
Transcriptome id Sobic.001G499500.2,Sobic.001G499500.1
Synonym Sb01g046660
Functional annotation la domain containing protein, putative, expressed
UniProt C5WXT7 , A0A1B6QQE9
Pfam PF05383
Panther DB PTHR22792 PTHR22792:SF2
NCBI CDD -
KEGG Orthology K18757; la-related protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G66100 : winged-helix DNA-binding transcription factor family protein
RAP-DB (Rice) LOC_Os03g06070.1 : la domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053442 , Zm00025a000710
Brachypodium KQK23576 , KQK23574 , KQK23575 , PNT78166 , PNT78167
Barley -
Wheat TraesCS4A02G034100 , TraesCS4A02G034100 , TraesCS4B02G271500 , TraesCS4D02G270600 , TraesCS4D02G270600 , TraesCS4D02G270600
Populus -


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cDNA sequences
Sobic.001G499500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G062900 expressed protein -
2 Sobic.006G050100 expressed protein -
3 Sobic.004G215200 expressed protein -
4 Sobic.008G141100 formin, putative, expressed -
5 Sobic.002G383700 4-alpha-glucanotransferase, chloroplast precursor, putative, expressed K00705: 4-alpha-glucanotransferase
6 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
7 Sobic.003G022000 phospho-N-acetylmuramoyl-pentapeptide-transferase, putative, expressed K01000: phospho-N-acetylmuramoyl-pentapeptide-transferase
8 Sobic.001G053350 - -
9 Sobic.010G255400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
10 Sobic.002G309100 phosphate-induced protein 1 conserved region domain containing protein, expressed -
11 Sobic.006G208200 GHMP kinases ATP-binding protein, putative, expressed K18677: galacturonokinase
12 Sobic.002G167100 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
13 Sobic.001G485500 - -
14 Sobic.009G025700 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
15 Sobic.007G192500 nodulin, putative, expressed -
16 Sobic.003G009000 harpin-induced protein, putative, expressed -
17 Sobic.009G186700 TraB family protein, putative, expressed -
18 Sobic.001G485700 DAG protein, chloroplast precursor, putative, expressed -
19 Sobic.001G073700 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
20 Sobic.009G163400 growth regulator related protein, putative, expressed -


Gene co-expression network
sample Sobic001G499500 Sobic001G499500 Sobic010G062900 Sobic010G062900 Sobic001G499500--Sobic010G062900 Sobic006G050100 Sobic006G050100 Sobic001G499500--Sobic006G050100 Sobic004G215200 Sobic004G215200 Sobic001G499500--Sobic004G215200 Sobic008G141100 Sobic008G141100 Sobic001G499500--Sobic008G141100 Sobic002G383700 Sobic002G383700 Sobic001G499500--Sobic002G383700 Sobic007G086600 Sobic007G086600 Sobic001G499500--Sobic007G086600 Sobic003G022000 Sobic003G022000 Sobic001G499500--Sobic003G022000 Sobic001G053350 Sobic001G053350 Sobic001G499500--Sobic001G053350 Sobic010G255400 Sobic010G255400 Sobic001G499500--Sobic010G255400 Sobic002G309100 Sobic002G309100 Sobic010G062900--Sobic002G309100 Sobic003G009000 Sobic003G009000 Sobic010G062900--Sobic003G009000 Sobic009G098700 Sobic009G098700 Sobic010G062900--Sobic009G098700 Sobic010G073900 Sobic010G073900 Sobic010G062900--Sobic010G073900 Sobic001G485700 Sobic001G485700 Sobic010G062900--Sobic001G485700 Sobic001G183666 Sobic001G183666 Sobic010G062900--Sobic001G183666 Sobic006G239500 Sobic006G239500 Sobic010G062900--Sobic006G239500 Sobic001G130600 Sobic001G130600 Sobic010G062900--Sobic001G130600 Sobic010G005100 Sobic010G005100 Sobic010G062900--Sobic010G005100 Sobic001G073700 Sobic001G073700 Sobic006G050100--Sobic001G073700 Sobic002G362500 Sobic002G362500 Sobic006G050100--Sobic002G362500 Sobic001G322400 Sobic001G322400 Sobic006G050100--Sobic001G322400 Sobic006G050100--Sobic008G141100 Sobic006G156400 Sobic006G156400 Sobic006G050100--Sobic006G156400 Sobic009G025700 Sobic009G025700 Sobic006G050100--Sobic009G025700 Sobic001G072000 Sobic001G072000 Sobic006G050100--Sobic001G072000 Sobic006G050100--Sobic009G098700 Sobic006G050100--Sobic010G073900 Sobic004G215200--Sobic001G053350 Sobic004G215200--Sobic010G062900 Sobic006G208200 Sobic006G208200 Sobic004G215200--Sobic006G208200 Sobic001G485500 Sobic001G485500 Sobic004G215200--Sobic001G485500 Sobic004G215200--Sobic001G499500 Sobic009G163400 Sobic009G163400 Sobic004G215200--Sobic009G163400 Sobic004G215200--Sobic002G309100 Sobic004G215200--Sobic007G086600 Sobic010G252100 Sobic010G252100 Sobic004G215200--Sobic010G252100 Sobic009G106700 Sobic009G106700 Sobic008G141100--Sobic009G106700 Sobic008G141100--Sobic006G239500 Sobic002G199800 Sobic002G199800 Sobic008G141100--Sobic002G199800 Sobic009G238650 Sobic009G238650 Sobic008G141100--Sobic009G238650 Sobic008G141100--Sobic006G156400 Sobic004G349600 Sobic004G349600 Sobic008G141100--Sobic004G349600 Sobic005G120400 Sobic005G120400 Sobic008G141100--Sobic005G120400 Sobic008G141100--Sobic010G073900 Sobic003G407700 Sobic003G407700 Sobic008G141100--Sobic003G407700 Sobic003G275400 Sobic003G275400 Sobic002G383700--Sobic003G275400 Sobic002G383700--Sobic001G499500 Sobic002G383700--Sobic009G163400 Sobic008G141900 Sobic008G141900 Sobic002G383700--Sobic008G141900 Sobic001G376501 Sobic001G376501 Sobic002G383700--Sobic001G376501 Sobic002G383700--Sobic001G485500 Sobic009G168200 Sobic009G168200 Sobic002G383700--Sobic009G168200 Sobic008G121501 Sobic008G121501 Sobic002G383700--Sobic008G121501 Sobic002G383700--Sobic001G053350 Sobic003G004800 Sobic003G004800 Sobic007G086600--Sobic003G004800 Sobic001G117900 Sobic001G117900 Sobic007G086600--Sobic001G117900 Sobic005G048600 Sobic005G048600 Sobic007G086600--Sobic005G048600 Sobic003G293400 Sobic003G293400 Sobic007G086600--Sobic003G293400 Sobic007G086600--Sobic003G022000 Sobic002G348400 Sobic002G348400 Sobic007G086600--Sobic002G348400 Sobic001G433600 Sobic001G433600 Sobic007G086600--Sobic001G433600 Sobic002G193500 Sobic002G193500 Sobic007G086600--Sobic002G193500 Sobic009G201000 Sobic009G201000 Sobic007G086600--Sobic009G201000 Sobic002G167100 Sobic002G167100 Sobic003G022000--Sobic002G167100 Sobic003G022000--Sobic007G086600 Sobic002G201700 Sobic002G201700 Sobic003G022000--Sobic002G201700 Sobic007G192500 Sobic007G192500 Sobic003G022000--Sobic007G192500 Sobic003G022000--Sobic002G309100 Sobic003G022000--Sobic001G499500 Sobic001G385000 Sobic001G385000 Sobic003G022000--Sobic001G385000 Sobic003G022000--Sobic001G117900 Sobic003G022000--Sobic009G025700 Sobic001G053350--Sobic001G485500 Sobic001G053350--Sobic004G215200 Sobic001G053350--Sobic010G255400 Sobic005G201200 Sobic005G201200 Sobic001G053350--Sobic005G201200 Sobic001G053350--Sobic008G121501 Sobic008G007800 Sobic008G007800 Sobic001G053350--Sobic008G007800 Sobic001G075200 Sobic001G075200 Sobic001G053350--Sobic001G075200 Sobic009G050800 Sobic009G050800 Sobic001G053350--Sobic009G050800 Sobic010G036901 Sobic010G036901 Sobic001G053350--Sobic010G036901 Sobic010G255400--Sobic008G007800 Sobic004G064800 Sobic004G064800 Sobic010G255400--Sobic004G064800 Sobic010G255400--Sobic005G201200 Sobic002G016000 Sobic002G016000 Sobic010G255400--Sobic002G016000 Sobic008G041300 Sobic008G041300 Sobic010G255400--Sobic008G041300 Sobic002G304500 Sobic002G304500 Sobic010G255400--Sobic002G304500 Sobic001G076600 Sobic001G076600 Sobic010G255400--Sobic001G076600 Sobic002G158300 Sobic002G158300 Sobic010G255400--Sobic002G158300 Sobic006G199500 Sobic006G199500 Sobic010G255400--Sobic006G199500
Octagon: transcription factors


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