Gene annotation
Transcriptome id Sobic.001G508800.1
Synonym Sb01g047500, TR-BAMY, BAM1, BMY7
Functional annotation similar to Beta-amylase (PubMedID : 29862293)
beta-amylase, putative, expressed
UniProt C5WYV3
Pfam PF01373
Panther DB PTHR31352 PTHR31352:SF14
NCBI CDD -
KEGG Orthology K01177; beta-amylase
Gene Ontology GO:0016161; beta-amylase activity GO:0000272polysaccharide catabolic process


Orthologs (automatic annotation)
TAIR AT3G23920 : beta-amylase 1
RAP-DB (Rice) LOC_Os03g04770.1 : beta-amylase, putative, expressed
MaizeGDB (Corn) Zm00025a003420 , Zm00025a017680 , Zm00025a051902 , Zm00025a000569
Brachypodium KQJ97853 , KQJ96996 , KQK23718
Barley HORVU4Hr1G084390.1 , HORVU1Hr1G038920.1 , HORVU1Hr1G038950.8 , HORVU1Hr1G038950.9 , HORVU1Hr1G038950.2 , HORVU1Hr1G038950.3 , HORVU1Hr1G038950.1 , HORVU1Hr1G038950.6 , HORVU1Hr1G038950.7 , HORVU1Hr1G038950.4 , HORVU1Hr1G038950.5 , HORVU1Hr1G038920.3 , HORVU1Hr1G038920.2 , HORVU1Hr1G038950.10 , HORVU1Hr1G038950.11 , HORVU1Hr1G038950.12 , HORVU1Hr1G038950.13 , HORVU1Hr1G038950.14
Wheat TraesCS4B02G344300 , TraesCS1B02G165400 , TraesCS1A02G147300 , TraesCS1B02G165400 , TraesCS5A02G513200 , TraesCS4D02G339400 , TraesCS1A02G147100
Populus -


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cDNA sequences
Sobic.001G508800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G006800 auxin-induced protein 5NG4, putative, expressed -
2 Sobic.004G103901 - -
3 Sobic.007G101600 - -
4 Sobic.008G062700 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
5 Sobic.001G286900 - -
6 Sobic.003G238250 - -
7 Sobic.001G261476 - -
8 Sobic.006G204400 maltose excess protein 1-like, chloroplast precursor, putative, expressed -
9 Sobic.001G226600 Beta amylase BAM (Os)(PubMedID : 27208977)@beta-amylase, putative, expressed K01177: beta-amylase
10 Sobic.006G001100 ELMO/CED-12 family protein, putative, expressed -
11 Sobic.005G170300 OsFBDUF56 - F-box and DUF domain containing protein, expressed -
12 Sobic.002G102300 - -
13 Sobic.005G048500 serine esterase family protein, putative, expressed -
14 Sobic.002G257001 - K13947: auxin efflux carrier family protein
15 Sobic.008G103250 - -
16 Sobic.005G135100 expressed protein -
17 Sobic.006G150300 expressed protein -
18 Sobic.007G176900 beta-galactosidase precursor, putative, expressed -
19 Sobic.010G124900 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
20 Sobic.001G241401 - -


Gene co-expression network
sample Sobic001G508800 Sobic001G508800 Sobic010G006800 Sobic010G006800 Sobic001G508800--Sobic010G006800 Sobic004G103901 Sobic004G103901 Sobic001G508800--Sobic004G103901 Sobic007G101600 Sobic007G101600 Sobic001G508800--Sobic007G101600 Sobic008G062700 Sobic008G062700 Sobic001G508800--Sobic008G062700 Sobic001G286900 Sobic001G286900 Sobic001G508800--Sobic001G286900 Sobic003G238250 Sobic003G238250 Sobic001G508800--Sobic003G238250 Sobic001G261476 Sobic001G261476 Sobic001G508800--Sobic001G261476 Sobic006G204400 Sobic006G204400 Sobic001G508800--Sobic006G204400 Sobic001G226600 Sobic001G226600 Sobic001G508800--Sobic001G226600 Sobic010G006800--Sobic003G238250 Sobic010G006800--Sobic007G101600 Sobic002G102300 Sobic002G102300 Sobic010G006800--Sobic002G102300 Sobic001G490950 Sobic001G490950 Sobic010G006800--Sobic001G490950 Sobic004G074900 Sobic004G074900 Sobic010G006800--Sobic004G074900 Sobic007G138000 Sobic007G138000 Sobic010G006800--Sobic007G138000 Sobic010G006800--Sobic001G286900 Sobic008G057600 Sobic008G057600 Sobic010G006800--Sobic008G057600 Sobic003G392275 Sobic003G392275 Sobic010G006800--Sobic003G392275 Sobic005G170300 Sobic005G170300 Sobic004G103901--Sobic005G170300 Sobic008G103250 Sobic008G103250 Sobic004G103901--Sobic008G103250 Sobic010G124900 Sobic010G124900 Sobic004G103901--Sobic010G124900 Sobic005G187600 Sobic005G187600 Sobic004G103901--Sobic005G187600 Sobic004G103901--Sobic006G204400 Sobic001G094700 Sobic001G094700 Sobic004G103901--Sobic001G094700 Sobic007G101600--Sobic001G286900 Sobic007G101600--Sobic007G138000 Sobic005G135100 Sobic005G135100 Sobic007G101600--Sobic005G135100 Sobic007G101600--Sobic003G238250 Sobic002G257001 Sobic002G257001 Sobic007G101600--Sobic002G257001 Sobic004G042501 Sobic004G042501 Sobic007G101600--Sobic004G042501 Sobic007G101600--Sobic010G006800 Sobic002G106600 Sobic002G106600 Sobic007G101600--Sobic002G106600 Sobic007G070900 Sobic007G070900 Sobic007G101600--Sobic007G070900 Sobic009G086700 Sobic009G086700 Sobic008G062700--Sobic009G086700 Sobic008G062700--Sobic001G508800 Sobic008G062700--Sobic004G103901 Sobic008G062700--Sobic007G138000 Sobic008G062700--Sobic007G101600 Sobic008G062700--Sobic001G226600 Sobic008G062700--Sobic010G006800 Sobic007G148600 Sobic007G148600 Sobic008G062700--Sobic007G148600 Sobic008G062700--Sobic004G042501 Sobic001G286900--Sobic002G257001 Sobic001G333700 Sobic001G333700 Sobic001G286900--Sobic001G333700 Sobic001G286900--Sobic005G135100 Sobic001G286900--Sobic004G042501 Sobic001G286900--Sobic002G106600 Sobic007G176900 Sobic007G176900 Sobic001G286900--Sobic007G176900 Sobic001G286900--Sobic007G070900 Sobic001G286900--Sobic007G101600 Sobic005G049850 Sobic005G049850 Sobic001G286900--Sobic005G049850 Sobic003G238250--Sobic007G101600 Sobic003G238250--Sobic010G006800 Sobic003G238250--Sobic001G286900 Sobic003G238250--Sobic002G102300 Sobic003G238250--Sobic004G074900 Sobic003G238250--Sobic007G138000 Sobic003G238250--Sobic002G257001 Sobic003G238250--Sobic005G135100 Sobic005G225500 Sobic005G225500 Sobic003G238250--Sobic005G225500 Sobic001G261476--Sobic001G226600 Sobic006G095700 Sobic006G095700 Sobic001G261476--Sobic006G095700 Sobic006G032000 Sobic006G032000 Sobic001G261476--Sobic006G032000 Sobic001G261476--Sobic002G257001 Sobic002G384500 Sobic002G384500 Sobic001G261476--Sobic002G384500 Sobic001G261476--Sobic001G333700 Sobic008G048200 Sobic008G048200 Sobic001G261476--Sobic008G048200 Sobic006G026200 Sobic006G026200 Sobic001G261476--Sobic006G026200 Sobic001G261476--Sobic007G176900 Sobic001G106800 Sobic001G106800 Sobic006G204400--Sobic001G106800 Sobic006G001100 Sobic006G001100 Sobic006G204400--Sobic006G001100 Sobic006G204400--Sobic007G176900 Sobic008G136601 Sobic008G136601 Sobic006G204400--Sobic008G136601 Sobic006G097400 Sobic006G097400 Sobic006G204400--Sobic006G097400 Sobic002G111100 Sobic002G111100 Sobic006G204400--Sobic002G111100 Sobic001G163666 Sobic001G163666 Sobic006G204400--Sobic001G163666 Sobic006G204400--Sobic008G103250 Sobic001G241401 Sobic001G241401 Sobic006G204400--Sobic001G241401 Sobic002G282600 Sobic002G282600 Sobic001G226600--Sobic002G282600 Sobic001G226600--Sobic006G032000 Sobic001G220800 Sobic001G220800 Sobic001G226600--Sobic001G220800 Sobic004G350400 Sobic004G350400 Sobic001G226600--Sobic004G350400 Sobic003G438500 Sobic003G438500 Sobic001G226600--Sobic003G438500 Sobic002G091300 Sobic002G091300 Sobic001G226600--Sobic002G091300 Sobic004G131400 Sobic004G131400 Sobic001G226600--Sobic004G131400 Sobic009G116100 Sobic009G116100 Sobic001G226600--Sobic009G116100 Sobic010G056500 Sobic010G056500 Sobic001G226600--Sobic010G056500
Octagon: transcription factors


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