Gene annotation
Transcriptome id Sobic.001G261476.2,Sobic.001G261476.1
Synonym -
Functional annotation -
UniProt C6JRS9
Pfam PF13855
Panther DB PTHR24365 PTHR24365:SF368
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G78230 : Outer arm dynein light chain 1 protein
RAP-DB (Rice) LOC_Os10g22980.4,LOC_Os10g22980.1 : leucine rich repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004027
Brachypodium PNT67289 , PNT67288 , PNT67290 , PNT67291 , PNT67292 , KQJ96494 , KQJ96495
Barley HORVU5Hr1G112710.6 , HORVU5Hr1G112710.5 , HORVU5Hr1G112710.4 , HORVU5Hr1G112710.3 , HORVU5Hr1G112710.2 , HORVU5Hr1G112710.1 , HORVU4Hr1G078540.12 , HORVU4Hr1G078540.13 , HORVU4Hr1G078540.10 , HORVU4Hr1G078540.11 , HORVU4Hr1G078540.18 , HORVU4Hr1G078540.4 , HORVU4Hr1G078540.5 , HORVU4Hr1G078540.6 , HORVU4Hr1G078540.7 , HORVU4Hr1G078540.1 , HORVU4Hr1G078540.8 , HORVU5Hr1G112750.2 , HORVU5Hr1G112750.1 , HORVU4Hr1G078540.16 , HORVU4Hr1G078540.17 , HORVU4Hr1G078540.14 , HORVU4Hr1G078540.15
Wheat TraesCS4D02G304100 , TraesCS4B02G305900 , TraesCS5D02G489200 , TraesCS4A02G406400 , TraesCS5A02G475800 , TraesCS5A02G475800 , TraesCS5B02G489100 , TraesCS5B02G489100 , TraesCS5B02G489100 , TraesCS7D02G125400 , TraesCS5D02G489200 , TraesCS5A02G475800 , TraesCS5D02G489200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G226600 Beta amylase BAM (Os)(PubMedID : 27208977)@beta-amylase, putative, expressed K01177: beta-amylase
2 Sobic.006G095700 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
3 Sobic.006G032000 - -
4 Sobic.002G257001 - K13947: auxin efflux carrier family protein
5 Sobic.002G384500 expressed protein -
6 Sobic.001G333700 ZOS3-10 - C2H2 zinc finger protein, expressed -
7 Sobic.008G048200 ATEXO70C2, putative, expressed -
8 Sobic.006G026200 gamma-thionin family domain containing protein, expressed -
9 Sobic.007G176900 beta-galactosidase precursor, putative, expressed -
10 Sobic.002G283000 transferase family protein, putative, expressed -
11 Sobic.002G282600 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
12 Sobic.003G438500 THION25 - Plant thionin family protein precursor, expressed -
13 Sobic.002G091200 pectinesterase inhibitor domain containing protein, expressed -
14 Sobic.003G333100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
15 Sobic.002G091300 pectinesterase inhibitor domain containing protein, expressed -
16 Sobic.004G350400 pectinesterase, putative, expressed K01051: pectinesterase
17 Sobic.001G220800 AGC_AGC_other_NDRh_TRCd.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
18 Sobic.003G173800 polygalacturonase, putative, expressed -
19 Sobic.010G056500 - -
20 Sobic.001G540000 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic001G261476 Sobic001G261476 Sobic001G226600 Sobic001G226600 Sobic001G261476--Sobic001G226600 Sobic006G095700 Sobic006G095700 Sobic001G261476--Sobic006G095700 Sobic006G032000 Sobic006G032000 Sobic001G261476--Sobic006G032000 Sobic002G257001 Sobic002G257001 Sobic001G261476--Sobic002G257001 Sobic002G384500 Sobic002G384500 Sobic001G261476--Sobic002G384500 Sobic001G333700 Sobic001G333700 Sobic001G261476--Sobic001G333700 Sobic008G048200 Sobic008G048200 Sobic001G261476--Sobic008G048200 Sobic006G026200 Sobic006G026200 Sobic001G261476--Sobic006G026200 Sobic007G176900 Sobic007G176900 Sobic001G261476--Sobic007G176900 Sobic002G282600 Sobic002G282600 Sobic001G226600--Sobic002G282600 Sobic001G226600--Sobic006G032000 Sobic001G220800 Sobic001G220800 Sobic001G226600--Sobic001G220800 Sobic004G350400 Sobic004G350400 Sobic001G226600--Sobic004G350400 Sobic003G438500 Sobic003G438500 Sobic001G226600--Sobic003G438500 Sobic002G091300 Sobic002G091300 Sobic001G226600--Sobic002G091300 Sobic004G131400 Sobic004G131400 Sobic001G226600--Sobic004G131400 Sobic009G116100 Sobic009G116100 Sobic001G226600--Sobic009G116100 Sobic010G056500 Sobic010G056500 Sobic001G226600--Sobic010G056500 Sobic002G283000 Sobic002G283000 Sobic006G095700--Sobic002G283000 Sobic004G137200 Sobic004G137200 Sobic006G095700--Sobic004G137200 Sobic001G540000 Sobic001G540000 Sobic006G095700--Sobic001G540000 Sobic004G025600 Sobic004G025600 Sobic006G095700--Sobic004G025600 Sobic002G091200 Sobic002G091200 Sobic006G095700--Sobic002G091200 Sobic002G106800 Sobic002G106800 Sobic006G095700--Sobic002G106800 Sobic003G173800 Sobic003G173800 Sobic006G095700--Sobic003G173800 Sobic009G098900 Sobic009G098900 Sobic006G095700--Sobic009G098900 Sobic005G010000 Sobic005G010000 Sobic006G095700--Sobic005G010000 Sobic009G098400 Sobic009G098400 Sobic006G032000--Sobic009G098400 Sobic005G214700 Sobic005G214700 Sobic006G032000--Sobic005G214700 Sobic004G187400 Sobic004G187400 Sobic006G032000--Sobic004G187400 Sobic010G271600 Sobic010G271600 Sobic006G032000--Sobic010G271600 Sobic010G190500 Sobic010G190500 Sobic006G032000--Sobic010G190500 Sobic008G102850 Sobic008G102850 Sobic006G032000--Sobic008G102850 Sobic002G417401 Sobic002G417401 Sobic006G032000--Sobic002G417401 Sobic006G022700 Sobic006G022700 Sobic006G032000--Sobic006G022700 Sobic009G090400 Sobic009G090400 Sobic006G032000--Sobic009G090400 Sobic002G257001--Sobic001G333700 Sobic002G106600 Sobic002G106600 Sobic002G257001--Sobic002G106600 Sobic007G070900 Sobic007G070900 Sobic002G257001--Sobic007G070900 Sobic005G135100 Sobic005G135100 Sobic002G257001--Sobic005G135100 Sobic004G042501 Sobic004G042501 Sobic002G257001--Sobic004G042501 Sobic005G049850 Sobic005G049850 Sobic002G257001--Sobic005G049850 Sobic001G337100 Sobic001G337100 Sobic002G257001--Sobic001G337100 Sobic007G112500 Sobic007G112500 Sobic002G257001--Sobic007G112500 Sobic005G207700 Sobic005G207700 Sobic002G257001--Sobic005G207700 Sobic001G135950 Sobic001G135950 Sobic002G384500--Sobic001G135950 Sobic004G071900 Sobic004G071900 Sobic002G384500--Sobic004G071900 Sobic006G215500 Sobic006G215500 Sobic002G384500--Sobic006G215500 Sobic002G125100 Sobic002G125100 Sobic002G384500--Sobic002G125100 Sobic004G099200 Sobic004G099200 Sobic002G384500--Sobic004G099200 Sobic001G525600 Sobic001G525600 Sobic002G384500--Sobic001G525600 Sobic002G279900 Sobic002G279900 Sobic002G384500--Sobic002G279900 Sobic010G001200 Sobic010G001200 Sobic002G384500--Sobic010G001200 Sobic003G313200 Sobic003G313200 Sobic002G384500--Sobic003G313200 Sobic004G293300 Sobic004G293300 Sobic001G333700--Sobic004G293300 Sobic009G203900 Sobic009G203900 Sobic001G333700--Sobic009G203900 Sobic007G222100 Sobic007G222100 Sobic001G333700--Sobic007G222100 Sobic001G024900 Sobic001G024900 Sobic001G333700--Sobic001G024900 Sobic002G053800 Sobic002G053800 Sobic001G333700--Sobic002G053800 Sobic001G269800 Sobic001G269800 Sobic001G333700--Sobic001G269800 Sobic001G306400 Sobic001G306400 Sobic001G333700--Sobic001G306400 Sobic001G306500 Sobic001G306500 Sobic001G333700--Sobic001G306500 Sobic010G091800 Sobic010G091800 Sobic001G333700--Sobic010G091800 Sobic008G048200--Sobic005G010000 Sobic008G048200--Sobic003G438500 Sobic008G048200--Sobic003G173800 Sobic008G048200--Sobic002G282600 Sobic008G048200--Sobic002G106800 Sobic008G048200--Sobic004G350400 Sobic008G048200--Sobic002G091200 Sobic004G303700 Sobic004G303700 Sobic008G048200--Sobic004G303700 Sobic003G061700 Sobic003G061700 Sobic008G048200--Sobic003G061700 Sobic008G028200 Sobic008G028200 Sobic006G026200--Sobic008G028200 Sobic002G150400 Sobic002G150400 Sobic006G026200--Sobic002G150400 Sobic010G093600 Sobic010G093600 Sobic006G026200--Sobic010G093600 Sobic008G027800 Sobic008G027800 Sobic006G026200--Sobic008G027800 Sobic001G002200 Sobic001G002200 Sobic006G026200--Sobic001G002200 Sobic009G096700 Sobic009G096700 Sobic006G026200--Sobic009G096700 Sobic009G016700 Sobic009G016700 Sobic006G026200--Sobic009G016700 Sobic006G171500 Sobic006G171500 Sobic006G026200--Sobic006G171500 Sobic002G140500 Sobic002G140500 Sobic006G026200--Sobic002G140500 Sobic006G205400 Sobic006G205400 Sobic007G176900--Sobic006G205400 Sobic003G333100 Sobic003G333100 Sobic007G176900--Sobic003G333100 Sobic001G212500 Sobic001G212500 Sobic007G176900--Sobic001G212500 Sobic010G144700 Sobic010G144700 Sobic007G176900--Sobic010G144700 Sobic007G176900--Sobic001G333700 Sobic001G093100 Sobic001G093100 Sobic007G176900--Sobic001G093100 Sobic005G040700 Sobic005G040700 Sobic007G176900--Sobic005G040700 Sobic010G051000 Sobic010G051000 Sobic007G176900--Sobic010G051000 Sobic001G288400 Sobic001G288400 Sobic007G176900--Sobic001G288400
Octagon: transcription factors


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