Gene annotation
Transcriptome id Sobic.006G026200.1
Synonym PDF2.2, LCR69, Sb06g002510
Functional annotation gamma-thionin family domain containing protein, expressed
UniProt C5YCR7
Pfam PF00304
Panther DB PTHR33147 PTHR33147:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02100 : low-molecular-weight cysteine-rich 69
RAP-DB (Rice) LOC_Os04g11195.1 : gamma-thionin family domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G028200 pollen allergen, putative, expressed -
2 Sobic.002G150400 harpin-induced protein 1 domain containing protein, expressed -
3 Sobic.010G093600 myosin, putative, expressed K10357: myosin V
4 Sobic.008G027800 pollen allergen, putative, expressed -
5 Sobic.001G002200 myosin, putative, expressed K10357: myosin V
6 Sobic.009G096700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
7 Sobic.009G016700 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
8 Sobic.006G171500 ZOS4-09 - C2H2 zinc finger protein, expressed -
9 Sobic.002G140500 POEI23 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
10 Sobic.001G348600 patatin, putative, expressed -
11 Sobic.001G452500 MA3 domain-containing protein("PubMedID : 26759170,PubMedID : 24597475")@MA3 domain containing protein, expressed -
12 Sobic.008G028100 pollen allergen, putative, expressed -
13 Sobic.004G070600 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
14 Sobic.001G539700 expansin precursor, putative, expressed -
15 Sobic.008G028300 pollen allergen, putative, expressed -
16 Sobic.004G029032 - -
17 Sobic.002G002600 la domain containing protein, expressed -
18 Sobic.001G228000 universal stress protein domain containing protein, putative, expressed -
19 Sobic.007G222400 - -
20 Sobic.001G024800 uncharacterized Cys-rich domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G026200 Sobic006G026200 Sobic008G028200 Sobic008G028200 Sobic006G026200--Sobic008G028200 Sobic002G150400 Sobic002G150400 Sobic006G026200--Sobic002G150400 Sobic010G093600 Sobic010G093600 Sobic006G026200--Sobic010G093600 Sobic008G027800 Sobic008G027800 Sobic006G026200--Sobic008G027800 Sobic001G002200 Sobic001G002200 Sobic006G026200--Sobic001G002200 Sobic009G096700 Sobic009G096700 Sobic006G026200--Sobic009G096700 Sobic009G016700 Sobic009G016700 Sobic006G026200--Sobic009G016700 Sobic006G171500 Sobic006G171500 Sobic006G026200--Sobic006G171500 Sobic002G140500 Sobic002G140500 Sobic006G026200--Sobic002G140500 Sobic008G028200--Sobic006G171500 Sobic008G028200--Sobic010G093600 Sobic008G028200--Sobic008G027800 Sobic001G348600 Sobic001G348600 Sobic008G028200--Sobic001G348600 Sobic008G028200--Sobic002G150400 Sobic008G028200--Sobic001G002200 Sobic004G029032 Sobic004G029032 Sobic008G028200--Sobic004G029032 Sobic008G028200--Sobic002G140500 Sobic008G028200--Sobic009G016700 Sobic002G150400--Sobic008G028200 Sobic002G150400--Sobic006G171500 Sobic002G150400--Sobic004G029032 Sobic001G024800 Sobic001G024800 Sobic002G150400--Sobic001G024800 Sobic002G150400--Sobic001G348600 Sobic002G150400--Sobic001G002200 Sobic003G400000 Sobic003G400000 Sobic002G150400--Sobic003G400000 Sobic002G150400--Sobic008G027800 Sobic001G228000 Sobic001G228000 Sobic002G150400--Sobic001G228000 Sobic010G093600--Sobic009G096700 Sobic010G093600--Sobic009G016700 Sobic008G028100 Sobic008G028100 Sobic010G093600--Sobic008G028100 Sobic010G093600--Sobic008G027800 Sobic001G539700 Sobic001G539700 Sobic010G093600--Sobic001G539700 Sobic010G093600--Sobic001G002200 Sobic002G002600 Sobic002G002600 Sobic010G093600--Sobic002G002600 Sobic010G093600--Sobic008G028200 Sobic008G028300 Sobic008G028300 Sobic010G093600--Sobic008G028300 Sobic008G027800--Sobic010G093600 Sobic008G027800--Sobic001G002200 Sobic008G027800--Sobic009G096700 Sobic008G027800--Sobic008G028200 Sobic008G027800--Sobic009G016700 Sobic008G027800--Sobic008G028100 Sobic008G027800--Sobic008G028300 Sobic008G027800--Sobic002G140500 Sobic008G027800--Sobic002G002600 Sobic001G002200--Sobic008G027800 Sobic001G002200--Sobic010G093600 Sobic001G002200--Sobic008G028300 Sobic001G002200--Sobic002G140500 Sobic001G002200--Sobic001G228000 Sobic001G002200--Sobic002G002600 Sobic001G002200--Sobic009G096700 Sobic001G002200--Sobic009G016700 Sobic001G002200--Sobic008G028200 Sobic009G096700--Sobic010G093600 Sobic009G096700--Sobic008G028100 Sobic009G089532 Sobic009G089532 Sobic009G096700--Sobic009G089532 Sobic009G096700--Sobic001G539700 Sobic009G096700--Sobic008G027800 Sobic009G096700--Sobic009G016700 Sobic009G096700--Sobic002G002600 Sobic009G096700--Sobic001G002200 Sobic009G096700--Sobic008G028300 Sobic009G016700--Sobic010G093600 Sobic009G016700--Sobic008G028100 Sobic009G016700--Sobic001G539700 Sobic009G016700--Sobic002G002600 Sobic007G222400 Sobic007G222400 Sobic009G016700--Sobic007G222400 Sobic009G016700--Sobic009G096700 Sobic009G016700--Sobic008G028300 Sobic009G016700--Sobic008G027800 Sobic009G016700--Sobic001G002200 Sobic006G171500--Sobic001G348600 Sobic006G171500--Sobic004G029032 Sobic006G171500--Sobic008G028200 Sobic006G171500--Sobic002G150400 Sobic006G171500--Sobic003G400000 Sobic008G027900 Sobic008G027900 Sobic006G171500--Sobic008G027900 Sobic006G171500--Sobic001G024800 Sobic006G171500--Sobic002G140500 Sobic006G171500--Sobic001G002200 Sobic002G140500--Sobic001G002200 Sobic002G140500--Sobic008G027800 Sobic002G140500--Sobic008G028200 Sobic002G140500--Sobic010G093600 Sobic002G140500--Sobic001G348600 Sobic002G140500--Sobic008G028300 Sobic002G140500--Sobic009G016700 Sobic002G140500--Sobic006G171500 Sobic002G140500--Sobic001G228000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.