Gene annotation
Transcriptome id Sobic.001G226600.2
Synonym TR-BAMY, BAM1, Sb01g019850, BMY7
Functional annotation Beta amylase BAM (Os) (PubMedID : 27208977)
beta-amylase, putative, expressed
UniProt A0A1Z5S6Y6
Pfam PF01373
Panther DB PTHR31352 PTHR31352:SF14
NCBI CDD -
KEGG Orthology K01177; beta-amylase
Gene Ontology GO:0016161; beta-amylase activity GO:0000272polysaccharide catabolic process


Orthologs (automatic annotation)
TAIR AT3G23920 : beta-amylase 1
RAP-DB (Rice) LOC_Os10g32810.1 : beta-amylase, putative, expressed
MaizeGDB (Corn) Zm00025a003420 , Zm00025a017680 , Zm00025a051902 , Zm00025a048305 , Zm00025a000569
Brachypodium KQJ97853 , KQJ96996 , KQK23718
Barley HORVU4Hr1G084390.1 , HORVU1Hr1G038950.8 , HORVU1Hr1G038950.9 , HORVU1Hr1G038950.2 , HORVU1Hr1G038950.1 , HORVU1Hr1G038950.6 , HORVU1Hr1G038950.7 , HORVU1Hr1G038950.4 , HORVU1Hr1G038950.5 , HORVU1Hr1G038920.4 , HORVU1Hr1G038920.3 , HORVU1Hr1G038920.2 , HORVU1Hr1G038920.1 , HORVU1Hr1G038950.10 , HORVU1Hr1G038950.11 , HORVU1Hr1G038950.12 , HORVU1Hr1G038950.13 , HORVU1Hr1G038950.14
Wheat TraesCS4B02G344300 , TraesCS1A02G215500 , TraesCS1B02G165400 , TraesCS1B02G165400 , TraesCS1D02G218000 , TraesCS5A02G513200 , TraesCS4D02G339400 , TraesCS1A02G147100 , TraesCS1A02G147300
Populus -


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cDNA sequences
Sobic.001G226600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G282600 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
2 Sobic.006G032000 - -
3 Sobic.001G220800 AGC_AGC_other_NDRh_TRCd.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
4 Sobic.004G350400 pectinesterase, putative, expressed K01051: pectinesterase
5 Sobic.003G438500 THION25 - Plant thionin family protein precursor, expressed -
6 Sobic.002G091300 pectinesterase inhibitor domain containing protein, expressed -
7 Sobic.004G131400 DEF7 - Defensin and Defensin-like DEFL family, expressed -
8 Sobic.009G116100 conserved hypothetical protein -
9 Sobic.010G056500 - -
10 Sobic.004G147700 pectinesterase inhibitor domain containing protein, putative, expressed -
11 Sobic.001G540000 expansin precursor, putative, expressed -
12 Sobic.004G025600 - -
13 Sobic.006G136700 GPI-anchored protein, putative, expressed -
14 Sobic.002G091200 pectinesterase inhibitor domain containing protein, expressed -
15 Sobic.002G417401 - -
16 Sobic.001G332200 cysteine proteinase EP-B 1 precursor, putative, expressed -
17 Sobic.005G010000 expressed protein -
18 Sobic.003G173800 polygalacturonase, putative, expressed -
19 Sobic.001G024300 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
20 Sobic.002G106800 expressed protein -


Gene co-expression network
sample Sobic001G226600 Sobic001G226600 Sobic002G282600 Sobic002G282600 Sobic001G226600--Sobic002G282600 Sobic006G032000 Sobic006G032000 Sobic001G226600--Sobic006G032000 Sobic001G220800 Sobic001G220800 Sobic001G226600--Sobic001G220800 Sobic004G350400 Sobic004G350400 Sobic001G226600--Sobic004G350400 Sobic003G438500 Sobic003G438500 Sobic001G226600--Sobic003G438500 Sobic002G091300 Sobic002G091300 Sobic001G226600--Sobic002G091300 Sobic004G131400 Sobic004G131400 Sobic001G226600--Sobic004G131400 Sobic009G116100 Sobic009G116100 Sobic001G226600--Sobic009G116100 Sobic010G056500 Sobic010G056500 Sobic001G226600--Sobic010G056500 Sobic002G282600--Sobic004G350400 Sobic002G282600--Sobic002G091300 Sobic004G147700 Sobic004G147700 Sobic002G282600--Sobic004G147700 Sobic002G282600--Sobic004G131400 Sobic002G282600--Sobic010G056500 Sobic002G282600--Sobic009G116100 Sobic002G091200 Sobic002G091200 Sobic002G282600--Sobic002G091200 Sobic001G540000 Sobic001G540000 Sobic002G282600--Sobic001G540000 Sobic004G025600 Sobic004G025600 Sobic002G282600--Sobic004G025600 Sobic009G098400 Sobic009G098400 Sobic006G032000--Sobic009G098400 Sobic005G214700 Sobic005G214700 Sobic006G032000--Sobic005G214700 Sobic004G187400 Sobic004G187400 Sobic006G032000--Sobic004G187400 Sobic010G271600 Sobic010G271600 Sobic006G032000--Sobic010G271600 Sobic010G190500 Sobic010G190500 Sobic006G032000--Sobic010G190500 Sobic008G102850 Sobic008G102850 Sobic006G032000--Sobic008G102850 Sobic002G417401 Sobic002G417401 Sobic006G032000--Sobic002G417401 Sobic006G022700 Sobic006G022700 Sobic006G032000--Sobic006G022700 Sobic009G090400 Sobic009G090400 Sobic006G032000--Sobic009G090400 Sobic001G220800--Sobic004G350400 Sobic001G220800--Sobic001G540000 Sobic001G220800--Sobic002G282600 Sobic001G220800--Sobic002G091200 Sobic001G220800--Sobic004G131400 Sobic004G025500 Sobic004G025500 Sobic001G220800--Sobic004G025500 Sobic001G220800--Sobic004G025600 Sobic005G010000 Sobic005G010000 Sobic001G220800--Sobic005G010000 Sobic003G173800 Sobic003G173800 Sobic001G220800--Sobic003G173800 Sobic004G350400--Sobic001G540000 Sobic004G350400--Sobic010G056500 Sobic004G350400--Sobic004G131400 Sobic004G350400--Sobic002G091200 Sobic004G350400--Sobic004G025600 Sobic004G350400--Sobic001G220800 Sobic004G350400--Sobic002G282600 Sobic002G106800 Sobic002G106800 Sobic004G350400--Sobic002G106800 Sobic004G350400--Sobic003G173800 Sobic003G438500--Sobic005G010000 Sobic003G438500--Sobic003G173800 Sobic007G100800 Sobic007G100800 Sobic003G438500--Sobic007G100800 Sobic008G186900 Sobic008G186900 Sobic003G438500--Sobic008G186900 Sobic003G061700 Sobic003G061700 Sobic003G438500--Sobic003G061700 Sobic003G438500--Sobic002G106800 Sobic010G161400 Sobic010G161400 Sobic003G438500--Sobic010G161400 Sobic009G098900 Sobic009G098900 Sobic003G438500--Sobic009G098900 Sobic003G438500--Sobic002G091200 Sobic002G091300--Sobic002G282600 Sobic002G091300--Sobic009G116100 Sobic002G091300--Sobic004G350400 Sobic001G024300 Sobic001G024300 Sobic002G091300--Sobic001G024300 Sobic006G136700 Sobic006G136700 Sobic002G091300--Sobic006G136700 Sobic002G091300--Sobic004G147700 Sobic003G009600 Sobic003G009600 Sobic002G091300--Sobic003G009600 Sobic002G091300--Sobic002G417401 Sobic002G091300--Sobic010G056500 Sobic004G131400--Sobic010G056500 Sobic004G131400--Sobic004G025600 Sobic004G131400--Sobic001G540000 Sobic004G131400--Sobic004G350400 Sobic004G131400--Sobic002G091200 Sobic001G332200 Sobic001G332200 Sobic004G131400--Sobic001G332200 Sobic004G131400--Sobic002G282600 Sobic004G131400--Sobic006G136700 Sobic004G137200 Sobic004G137200 Sobic004G131400--Sobic004G137200 Sobic009G116100--Sobic001G024300 Sobic009G116100--Sobic006G136700 Sobic009G116100--Sobic003G009600 Sobic009G116100--Sobic001G332200 Sobic009G116100--Sobic002G091300 Sobic002G157900 Sobic002G157900 Sobic009G116100--Sobic002G157900 Sobic009G116100--Sobic002G417401 Sobic009G116100--Sobic002G282600 Sobic009G089000 Sobic009G089000 Sobic009G116100--Sobic009G089000 Sobic010G056500--Sobic004G131400 Sobic010G056500--Sobic004G025600 Sobic010G056500--Sobic001G540000 Sobic010G056500--Sobic004G350400 Sobic010G056500--Sobic002G091200 Sobic010G056500--Sobic001G332200 Sobic010G056500--Sobic002G282600 Sobic010G056500--Sobic002G106800 Sobic010G056500--Sobic004G137200
Octagon: transcription factors


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