Gene annotation
Transcriptome id Sobic.002G083000.3,Sobic.002G083000.2,Sobic.002G083000.1
Synonym Sb02g006940, HMA2, ATHMA2
Functional annotation cadmium/zinc-transporting ATPase, putative, expressed
UniProt C5XDI2 , A0A1B6Q9Y2
Pfam PF12710 PF00122 PF00403 PF12710 PF00122
Panther DB PTHR24093 PTHR24093:SF318
NCBI CDD -
KEGG Orthology K01534; Zn2+/Cd2+-exporting ATPase
Gene Ontology GO:0000166; nucleotide binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G30110 : heavy metal atpase 2
RAP-DB (Rice) LOC_Os07g12900.1 : cadmium/zinc-transporting ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a045447 , Zm00025a013372 , Zm00025a013370
Brachypodium KQK20301 , KQK17390
Barley HORVU5Hr1G094430.17 , HORVU5Hr1G094430.16 , HORVU5Hr1G094430.15 , HORVU5Hr1G094430.14 , HORVU5Hr1G094430.13 , HORVU5Hr1G094430.12 , HORVU5Hr1G094430.10 , HORVU5Hr1G094430.19 , HORVU5Hr1G094430.18 , HORVU5Hr1G094430.7 , HORVU5Hr1G094430.6 , HORVU5Hr1G094430.5 , HORVU5Hr1G094430.4 , HORVU5Hr1G094430.3 , HORVU5Hr1G094430.2 , HORVU5Hr1G094430.9 , HORVU5Hr1G094430.8 , HORVU7Hr1G097210.18 , HORVU7Hr1G097210.19 , HORVU7Hr1G097210.16 , HORVU7Hr1G097210.17 , HORVU7Hr1G097210.14 , HORVU7Hr1G097210.15 , HORVU7Hr1G097210.12 , HORVU7Hr1G097210.13 , HORVU7Hr1G097210.10 , HORVU7Hr1G097210.11 , HORVU7Hr1G097210.8 , HORVU7Hr1G097210.9 , HORVU7Hr1G097210.6 , HORVU7Hr1G097210.7 , HORVU7Hr1G097210.4 , HORVU7Hr1G097210.5 , HORVU7Hr1G097210.1 , HORVU7Hr1G097210.2 , HORVU7Hr1G097210.3 , HORVU5Hr1G094430.31 , HORVU5Hr1G094430.30 , HORVU7Hr1G097210.27 , HORVU7Hr1G097210.26 , HORVU7Hr1G097210.25 , HORVU7Hr1G097210.24 , HORVU7Hr1G097210.23 , HORVU7Hr1G097210.22 , HORVU7Hr1G097210.21 , HORVU7Hr1G097210.20 , HORVU5Hr1G094430.28 , HORVU5Hr1G094430.29 , HORVU5Hr1G094430.26 , HORVU5Hr1G094430.27 , HORVU5Hr1G094430.24 , HORVU5Hr1G094430.25 , HORVU5Hr1G094430.22 , HORVU5Hr1G094430.23 , HORVU5Hr1G094430.20 , HORVU5Hr1G094430.21
Wheat TraesCS5B02G388000 , TraesCS7D02G412800 , TraesCS5D02G392700 , TraesCS5A02G383400
Populus -


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cDNA sequences
Sobic.002G083000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G145050 - -
2 Sobic.008G085350 - -
3 Sobic.009G189000 expressed protein -
4 Sobic.005G045200 homeobox domain containing protein, expressed -
5 Sobic.009G023401 - -
6 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
7 Sobic.003G366100 expressed protein -
8 Sobic.001G351400 Metacaspase 1("PubMedID : 26759170,PubMedID : 24597475")@ICE-like protease p20 domain containing protein, putative, expressed -
9 Sobic.006G060800 basic proline-rich protein, putative, expressed -
10 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.002G271600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
12 Sobic.007G014600 transferase family protein, putative, expressed -
13 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
14 Sobic.003G402200 sensitivity to red light reduced protein 1, putative, expressed -
15 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
16 Sobic.003G410900 CRAL/TRIO domain containing protein, expressed -
17 Sobic.010G078500 - -
18 Sobic.007G025900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
19 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.002G073900 expressed protein -


Gene co-expression network
sample Sobic002G083000 Sobic002G083000 Sobic001G145050 Sobic001G145050 Sobic002G083000--Sobic001G145050 Sobic008G085350 Sobic008G085350 Sobic002G083000--Sobic008G085350 Sobic009G189000 Sobic009G189000 Sobic002G083000--Sobic009G189000 Sobic005G045200 Sobic005G045200 Sobic002G083000--Sobic005G045200 Sobic009G023401 Sobic009G023401 Sobic002G083000--Sobic009G023401 Sobic009G205600 Sobic009G205600 Sobic002G083000--Sobic009G205600 Sobic003G366100 Sobic003G366100 Sobic002G083000--Sobic003G366100 Sobic001G351400 Sobic001G351400 Sobic002G083000--Sobic001G351400 Sobic006G060800 Sobic006G060800 Sobic002G083000--Sobic006G060800 Sobic009G255100 Sobic009G255100 Sobic001G145050--Sobic009G255100 Sobic002G041800 Sobic002G041800 Sobic001G145050--Sobic002G041800 Sobic002G366100 Sobic002G366100 Sobic001G145050--Sobic002G366100 Sobic001G145050--Sobic006G060800 Sobic003G402200 Sobic003G402200 Sobic001G145050--Sobic003G402200 Sobic004G078600 Sobic004G078600 Sobic001G145050--Sobic004G078600 Sobic005G085500 Sobic005G085500 Sobic001G145050--Sobic005G085500 Sobic002G271600 Sobic002G271600 Sobic001G145050--Sobic002G271600 Sobic002G209100 Sobic002G209100 Sobic001G145050--Sobic002G209100 SobicK044407 SobicK044407 Sobic008G085350--SobicK044407 Sobic003G378301 Sobic003G378301 Sobic008G085350--Sobic003G378301 Sobic006G045000 Sobic006G045000 Sobic008G085350--Sobic006G045000 Sobic001G012000 Sobic001G012000 Sobic008G085350--Sobic001G012000 Sobic001G056400 Sobic001G056400 Sobic008G085350--Sobic001G056400 Sobic005G133166 Sobic005G133166 Sobic008G085350--Sobic005G133166 Sobic008G181801 Sobic008G181801 Sobic008G085350--Sobic008G181801 Sobic002G423600 Sobic002G423600 Sobic008G085350--Sobic002G423600 Sobic001G233200 Sobic001G233200 Sobic008G085350--Sobic001G233200 Sobic004G063200 Sobic004G063200 Sobic009G189000--Sobic004G063200 Sobic010G214000 Sobic010G214000 Sobic009G189000--Sobic010G214000 Sobic003G108600 Sobic003G108600 Sobic009G189000--Sobic003G108600 Sobic001G404500 Sobic001G404500 Sobic009G189000--Sobic001G404500 Sobic009G189000--Sobic009G023401 Sobic009G189000--Sobic001G351400 Sobic002G265400 Sobic002G265400 Sobic009G189000--Sobic002G265400 Sobic001G005500 Sobic001G005500 Sobic009G189000--Sobic001G005500 Sobic010G063200 Sobic010G063200 Sobic009G189000--Sobic010G063200 Sobic005G045200--Sobic003G378301 Sobic004G068800 Sobic004G068800 Sobic005G045200--Sobic004G068800 Sobic005G045200--Sobic006G060800 Sobic010G130800 Sobic010G130800 Sobic005G045200--Sobic010G130800 Sobic004G217700 Sobic004G217700 Sobic005G045200--Sobic004G217700 Sobic005G045200--Sobic003G366100 Sobic005G045200--Sobic001G145050 Sobic007G025900 Sobic007G025900 Sobic005G045200--Sobic007G025900 Sobic003G410900 Sobic003G410900 Sobic005G045200--Sobic003G410900 Sobic009G023401--Sobic009G189000 Sobic002G362100 Sobic002G362100 Sobic009G023401--Sobic002G362100 Sobic009G023401--Sobic010G063200 Sobic009G023401--Sobic001G404500 Sobic010G229450 Sobic010G229450 Sobic009G023401--Sobic010G229450 Sobic009G023401--Sobic006G060800 Sobic008G152200 Sobic008G152200 Sobic009G023401--Sobic008G152200 Sobic009G023401--Sobic004G063200 Sobic009G023401--Sobic001G351400 Sobic009G205600--Sobic004G217700 Sobic009G205600--Sobic003G402200 Sobic009G205600--Sobic002G271600 Sobic001G410450 Sobic001G410450 Sobic009G205600--Sobic001G410450 Sobic007G014600 Sobic007G014600 Sobic009G205600--Sobic007G014600 Sobic004G195800 Sobic004G195800 Sobic009G205600--Sobic004G195800 Sobic009G205600--Sobic002G209100 Sobic009G205600--Sobic006G060800 Sobic004G187300 Sobic004G187300 Sobic009G205600--Sobic004G187300 Sobic008G060300 Sobic008G060300 Sobic003G366100--Sobic008G060300 Sobic003G310200 Sobic003G310200 Sobic003G366100--Sobic003G310200 Sobic007G089300 Sobic007G089300 Sobic003G366100--Sobic007G089300 Sobic002G173900 Sobic002G173900 Sobic003G366100--Sobic002G173900 Sobic005G193600 Sobic005G193600 Sobic003G366100--Sobic005G193600 Sobic002G202700 Sobic002G202700 Sobic003G366100--Sobic002G202700 Sobic003G366100--Sobic001G012000 Sobic003G366100--Sobic003G378301 Sobic003G366100--Sobic010G130800 Sobic006G258700 Sobic006G258700 Sobic001G351400--Sobic006G258700 Sobic001G351400--Sobic009G189000 Sobic001G102300 Sobic001G102300 Sobic001G351400--Sobic001G102300 Sobic001G351400--Sobic002G362100 Sobic010G207500 Sobic010G207500 Sobic001G351400--Sobic010G207500 Sobic001G351400--Sobic001G404500 Sobic010G184600 Sobic010G184600 Sobic001G351400--Sobic010G184600 Sobic001G351400--Sobic003G410900 Sobic001G525900 Sobic001G525900 Sobic001G351400--Sobic001G525900 Sobic006G060800--Sobic008G060300 Sobic009G252100 Sobic009G252100 Sobic006G060800--Sobic009G252100 Sobic006G060800--Sobic002G041800 Sobic006G060800--Sobic004G063200 Sobic001G201800 Sobic001G201800 Sobic006G060800--Sobic001G201800 Sobic006G060800--Sobic004G078600 Sobic006G060800--Sobic007G089300 Sobic006G060800--Sobic001G145050 Sobic006G060800--Sobic002G366100
Octagon: transcription factors


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