Gene annotation
Transcriptome id Sobic.002G092400.2
Synonym Sb02g007640
Functional annotation 60S acidic ribosomal protein, putative, expressed
UniProt A0A1W0W320
Pfam PF00428
Panther DB PTHR21141 PTHR21141:SF38
NCBI CDD -
KEGG Orthology K02943; RP-LP2, large subunit ribosomal protein LP2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G28500 : 60S acidic ribosomal protein family
RAP-DB (Rice) LOC_Os08g15180.1 : 60S acidic ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a045521
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G294000 purine permease, putative, expressed -
2 Sobic.002G369400 Sulfotransferase family protein (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
3 Sobic.008G158501 - -
4 Sobic.001G189000 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.001G242000 CSLF7 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
6 Sobic.008G022000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
7 Sobic.002G012300 DUF538 domain containing protein, putative, expressed -
8 Sobic.010G009900 - -
9 Sobic.002G063800 transferase family protein, putative, expressed -
10 Sobic.007G054900 plant protein of unknown function domain containing protein, expressed -
11 Sobic.003G426600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.008G158600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.010G062300 plant protein of unknown function domain containing protein, expressed -
14 Sobic.009G144800 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.006G008000 O-methyltransferase, putative, expressed -
16 Sobic.008G036800 alkylresorcinol synthase gene preferentially expressed in root hair (PubMedID : 20348430)@Chalcone and stilbene synthase family("PubMedID : 26759170,PubMedID : 24597475")@chalcone synthase, putative, expressed -
17 Sobic.003G136200 Cupin domain containing protein, expressed -
18 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
19 Sobic.001G114900 - -
20 Sobic.008G158400 LTPL113 - Protease inhibitor/seed storage/LTP family protein precursor, expressed K02883: RP-L18e, large subunit ribosomal protein L18e


Gene co-expression network
sample Sobic002G092400 Sobic002G092400 Sobic002G294000 Sobic002G294000 Sobic002G092400--Sobic002G294000 Sobic002G369400 Sobic002G369400 Sobic002G092400--Sobic002G369400 Sobic008G158501 Sobic008G158501 Sobic002G092400--Sobic008G158501 Sobic001G189000 Sobic001G189000 Sobic002G092400--Sobic001G189000 Sobic001G242000 Sobic001G242000 Sobic002G092400--Sobic001G242000 Sobic008G022000 Sobic008G022000 Sobic002G092400--Sobic008G022000 Sobic002G012300 Sobic002G012300 Sobic002G092400--Sobic002G012300 Sobic010G009900 Sobic010G009900 Sobic002G092400--Sobic010G009900 Sobic002G063800 Sobic002G063800 Sobic002G092400--Sobic002G063800 Sobic006G008000 Sobic006G008000 Sobic002G294000--Sobic006G008000 Sobic002G012500 Sobic002G012500 Sobic002G294000--Sobic002G012500 Sobic002G294000--Sobic008G022000 Sobic008G066200 Sobic008G066200 Sobic002G294000--Sobic008G066200 Sobic002G294000--Sobic002G012300 Sobic006G141700 Sobic006G141700 Sobic002G294000--Sobic006G141700 Sobic004G141100 Sobic004G141100 Sobic002G294000--Sobic004G141100 Sobic009G145600 Sobic009G145600 Sobic002G294000--Sobic009G145600 Sobic003G079200 Sobic003G079200 Sobic002G294000--Sobic003G079200 Sobic008G027600 Sobic008G027600 Sobic002G369400--Sobic008G027600 Sobic002G369400--Sobic001G242000 Sobic001G114900 Sobic001G114900 Sobic002G369400--Sobic001G114900 Sobic010G062300 Sobic010G062300 Sobic002G369400--Sobic010G062300 Sobic002G369400--Sobic002G012300 Sobic002G369400--Sobic003G079200 Sobic002G369400--Sobic008G022000 Sobic002G369400--Sobic002G063800 Sobic002G369400--Sobic008G158501 Sobic008G158501--Sobic002G012300 Sobic008G158600 Sobic008G158600 Sobic008G158501--Sobic008G158600 Sobic008G158501--Sobic008G022000 Sobic008G158501--Sobic003G079200 Sobic008G158501--Sobic002G012500 Sobic008G158501--Sobic006G008000 Sobic008G158501--Sobic002G063800 Sobic008G158501--Sobic008G066200 Sobic008G036800 Sobic008G036800 Sobic008G158501--Sobic008G036800 Sobic001G189000--Sobic002G294000 Sobic001G189000--Sobic002G092400 Sobic003G136200 Sobic003G136200 Sobic001G189000--Sobic003G136200 Sobic006G158400 Sobic006G158400 Sobic001G189000--Sobic006G158400 Sobic006G159100 Sobic006G159100 Sobic001G189000--Sobic006G159100 Sobic006G009100 Sobic006G009100 Sobic001G189000--Sobic006G009100 Sobic003G426600 Sobic003G426600 Sobic001G189000--Sobic003G426600 Sobic009G015900 Sobic009G015900 Sobic001G189000--Sobic009G015900 Sobic006G191800 Sobic006G191800 Sobic001G189000--Sobic006G191800 Sobic007G054900 Sobic007G054900 Sobic001G242000--Sobic007G054900 Sobic001G242000--Sobic002G369400 Sobic001G242000--Sobic002G063800 Sobic001G330300 Sobic001G330300 Sobic001G242000--Sobic001G330300 Sobic010G270700 Sobic010G270700 Sobic001G242000--Sobic010G270700 Sobic001G242000--Sobic010G062300 Sobic006G050800 Sobic006G050800 Sobic001G242000--Sobic006G050800 Sobic001G242000--Sobic010G009900 Sobic001G449100 Sobic001G449100 Sobic001G242000--Sobic001G449100 Sobic008G022000--Sobic002G012300 Sobic008G022000--Sobic006G008000 Sobic008G022000--Sobic008G066200 Sobic008G022000--Sobic002G012500 Sobic008G022000--Sobic008G158501 Sobic008G022000--Sobic003G079200 Sobic008G022000--Sobic008G158600 Sobic008G022000--Sobic008G036800 Sobic008G022000--Sobic003G426600 Sobic002G012300--Sobic008G158600 Sobic002G012300--Sobic008G158501 Sobic002G012300--Sobic008G022000 Sobic002G012300--Sobic003G079200 Sobic002G012300--Sobic006G008000 Sobic002G012300--Sobic002G012500 Sobic002G012300--Sobic008G066200 Sobic002G012300--Sobic008G036800 Sobic002G012300--Sobic002G063800 Sobic010G009900--Sobic007G054900 Sobic010G009900--Sobic006G050800 Sobic009G116600 Sobic009G116600 Sobic010G009900--Sobic009G116600 Sobic010G009900--Sobic001G242000 SobicK026900 SobicK026900 Sobic010G009900--SobicK026900 Sobic010G045500 Sobic010G045500 Sobic010G009900--Sobic010G045500 Sobic010G009900--Sobic002G369400 Sobic010G009900--Sobic003G136200 Sobic010G009900--Sobic002G012300 Sobic002G063800--Sobic003G079200 Sobic006G235000 Sobic006G235000 Sobic002G063800--Sobic006G235000 Sobic002G063800--Sobic010G062300 Sobic002G063800--Sobic006G008000 Sobic002G063800--Sobic002G012300 Sobic002G063800--Sobic008G158600 Sobic002G063800--Sobic009G145600 Sobic005G086600 Sobic005G086600 Sobic002G063800--Sobic005G086600 Sobic002G063800--Sobic002G012500
Octagon: transcription factors


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