Gene annotation
| Transcriptome id | Sobic.002G158900.1 |
|---|---|
| Synonym | Sb02g020270 |
| Functional annotation | AMP-binding domain containing protein, expressed |
| UniProt | C5X8C9 |
| Pfam | PF13193 PF00501 |
| Panther DB | PTHR24096 PTHR24096:SF160 |
| NCBI CDD | KOG1176; Acyl-CoA synthetase |
| KEGG Orthology | - |
| Gene Ontology | GO:0008152; metabolic process GO:0003824catalytic activity |
Orthologs (automatic annotation)
| TAIR | AT5G63380 : AMP-dependent synthetase and ligase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g17970.1 : AMP-binding domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a046274 |
| Brachypodium | KQJ88614 |
| Barley | HORVU3Hr1G100420.1 , HORVU3Hr1G100420.5 , HORVU3Hr1G100420.10 , HORVU3Hr1G100420.11 , HORVU3Hr1G100420.8 , HORVU3Hr1G100420.9 , HORVU3Hr1G100420.2 , HORVU3Hr1G100420.4 , HORVU3Hr1G100420.6 , HORVU3Hr1G100420.7 , HORVU3Hr1G100420.3 |
| Wheat | TraesCS3A02G472200 , TraesCS5B02G570100 |
| Populus | - |
JBrowse
| Sobic.002G158900 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G099100 | expressed protein | - |
| 2 | Sobic.001G514300 | Glutathione S-transferase("PubMedID : 26759170,PubMedID : 24597475")@glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 3 | Sobic.005G231300 | thaumatin, putative, expressed | - |
| 4 | Sobic.003G083600 | DNA binding protein, putative, expressed | - |
| 5 | Sobic.004G271500 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 6 | Sobic.003G082800 | transferase family protein, putative, expressed | K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase |
| 7 | Sobic.009G079900 | endoglucanase precursor, putative, expressed | - |
| 8 | Sobic.005G025900 | "domain confirmed by Pfam database, expression supported by NCBI EST database,expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed | K13947: auxin efflux carrier family protein |
| 9 | Sobic.001G144200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed | - |
| 10 | Sobic.010G131400 | rho GDP-dissociation inhibitor 1, putative, expressed | K12462: ARHGDI, Rho GDP-dissociation inhibitor |
| 11 | Sobic.009G208700 | POEI45 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 12 | Sobic.006G085700 | OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed | K09580: PDIA1, protein disulfide-isomerase A1 |
| 13 | Sobic.008G168100 | Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed | K09338: homeobox-leucine zipper protein |
| 14 | Sobic.007G154100 | aspartic proteinase nepenthesin precursor, putative, expressed | - |
| 15 | Sobic.003G140200 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 16 | Sobic.003G001300 | ZOS1-05 - C2H2 zinc finger protein, expressed | - |
| 17 | Sobic.002G357800 | SHR, putative, expressed | - |
| 18 | Sobic.008G077900 | exostosin family domain containing protein, expressed | - |
| 19 | Sobic.007G154200 | aspartic proteinase nepenthesin-1 precursor, putative, expressed | - |
| 20 | Sobic.002G222600 | aspartic proteinase nepenthesin precursor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
